Detailed information NTG0452869

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: HUE57_RS05040
• Genome accession: NZ_CP054491
• Coordinates: 896835..897821 (-)
• Length: 328 a.a.
• NCBI ID: WP_078482137.1
• Uniprot ID: -
• Organism: Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 891835..902821

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUE57_RS05015 (HUE57_05015)	bioD	891999..892676 (+)	678	WP_078482081.1	dethiobiotin synthase	-
HUE57_RS05020 (HUE57_05020)	rpoH	892740..893597 (-)	858	WP_078482082.1	RNA polymerase sigma factor RpoH	-
HUE57_RS05025 (HUE57_05025)	-	893667..895055 (-)	1389	WP_078482083.1	GGDEF domain-containing response regulator	-
HUE57_RS05030 (HUE57_05030)	ftsX	895150..896127 (-)	978	WP_078482084.1	permease-like cell division protein FtsX	-
HUE57_RS05035 (HUE57_05035)	ftsE	896124..896798 (-)	675	WP_078482085.1	cell division ATP-binding protein FtsE	-
HUE57_RS05040 (HUE57_05040)	pilA	896835..897821 (-)	987	WP_078482137.1	signal recognition particle-docking protein FtsY	Machinery gene
HUE57_RS05045 (HUE57_05045)	-	897917..899188 (+)	1272	WP_174672822.1	M16 family metallopeptidase	-
HUE57_RS05050 (HUE57_05050)	-	899300..900607 (+)	1308	WP_236860689.1	M16 family metallopeptidase	-
HUE57_RS05055 (HUE57_05055)	-	900698..901222 (-)	525	WP_174672823.1	hypothetical protein	-
HUE57_RS05060 (HUE57_05060)	rsmD	901396..901947 (+)	552	Protein_1035	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
HUE57_RS05065 (HUE57_05065)	coaD	901963..902439 (+)	477	WP_078482096.1	pantetheine-phosphate adenylyltransferase	-
HUE57_RS05070 (HUE57_05070)	-	902496..902744 (+)	249	WP_078482097.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 35587.59 Da
• Isoelectric Point: 4.8781

>NTDB_id=452869 HUE57_RS05040 WP_078482137.1 896835..897821(-) (pilA) [Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall]
MFGFKKEKSSPEEKPVEKKGLFGRIRQGLSRTREVLNTDVRDLIAAKRTIDDEVLEELETQLLLADVGIEATQSIIAELT
ERVSRQELDDAEALFAALREQMIAILEPCAKPLDPPSDIKPFTILMVGINGAGKTTTIGKLARRFQDQGRSVVLAAGDTF
RAAAVEQLQTWGERNNINVIAQHSGADSASVIFDGVEAATARNTDILIADTAGRLHTQGNLMEELKKIKRVMGKKNEQAP
HEVMLVVDAGTGQNALNQAEQFHNAVGLTGITLTKLDGTAKGGIVIAIAKRLGIPIRFIGVGEGIEDLRPFDASEFVDAL
LQTQGEEQ

Nucleotide

• Length: 987 bp

>NTDB_id=452869 HUE57_RS05040 WP_078482137.1 896835..897821(-) (pilA) [Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall]
ATGTTTGGTTTCAAAAAAGAGAAGAGTAGCCCAGAAGAGAAGCCCGTAGAGAAGAAGGGGCTATTCGGCCGTATACGCCA
GGGGCTGAGCCGCACCCGCGAGGTGCTCAATACCGATGTGCGCGACCTGATCGCCGCCAAGCGCACCATCGACGATGAGG
TGCTCGAAGAGCTCGAGACCCAGCTGCTGCTGGCCGACGTTGGTATTGAGGCGACTCAGTCGATTATTGCCGAGCTGACG
GAACGTGTTTCACGCCAGGAGCTCGACGACGCTGAGGCACTGTTCGCCGCCCTGCGTGAACAGATGATCGCCATTCTTGA
GCCCTGCGCCAAACCACTCGACCCGCCTAGCGACATCAAACCCTTCACCATCCTGATGGTCGGTATCAACGGTGCTGGCA
AGACCACCACCATCGGCAAGCTTGCTCGTCGTTTTCAGGATCAGGGCCGTTCGGTGGTACTCGCGGCCGGCGACACCTTC
CGTGCCGCCGCCGTCGAGCAGTTGCAGACCTGGGGTGAGCGCAACAACATCAACGTCATCGCCCAGCACAGCGGTGCCGA
CTCCGCCTCGGTTATCTTCGACGGTGTCGAGGCCGCAACGGCACGCAATACAGACATCCTGATCGCTGACACCGCCGGTC
GACTCCATACCCAGGGCAACCTGATGGAGGAGTTGAAGAAGATCAAACGGGTAATGGGTAAAAAGAATGAACAGGCACCA
CATGAGGTGATGCTGGTTGTCGACGCTGGCACTGGGCAGAATGCGCTCAACCAGGCGGAGCAGTTCCACAATGCGGTCGG
CCTGACTGGTATAACCCTGACCAAGCTCGACGGTACCGCCAAGGGCGGCATCGTCATCGCCATCGCCAAACGACTTGGCA
TCCCGATCCGTTTCATCGGTGTGGGTGAGGGAATCGAGGATCTACGCCCCTTCGATGCCAGCGAGTTTGTCGATGCCCTG
CTACAGACGCAGGGCGAAGAACAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (122-321)

• SRP54-type protein, helical bundle domain (SRP54_N) (40-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	54.605	92.683	0.506