Detailed information NTG0045286

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HPAKL117_RS02270
• Genome accession: NC_019560
• Coordinates: 471576..472778 (-)
• Length: 400 a.a.
• NCBI ID: WP_015085626.1
• Uniprot ID: -
• Organism: Helicobacter pylori Aklavik117
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 466576..477778

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPAKL117_RS02245 (HPAKL117_02250)	-	466678..467196 (-)	519	WP_015085621.1	hypothetical protein	-
HPAKL117_RS02250 (HPAKL117_02255)	-	467193..468137 (-)	945	WP_015085622.1	CpaF/VirB11 family protein	-
HPAKL117_RS02255 (HPAKL117_02260)	-	468141..468413 (-)	273	WP_015085623.1	hypothetical protein	-
HPAKL117_RS02260 (HPAKL117_02265)	-	468431..469384 (-)	954	WP_015085624.1	hypothetical protein	-
HPAKL117_RS02265 (HPAKL117_02270)	-	469397..471592 (-)	2196	WP_015085625.1	collagen-like protein	-
HPAKL117_RS02270 (HPAKL117_02275)	comB10	471576..472778 (-)	1203	WP_015085626.1	DNA type IV secretion system protein ComB10	Machinery gene
HPAKL117_RS02275 (HPAKL117_02280)	-	472775..474412 (-)	1638	WP_015085627.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HPAKL117_RS02280 (HPAKL117_02285)	-	474409..475539 (-)	1131	WP_015085628.1	VirB8/TrbF family protein	-
HPAKL117_RS08400	-	475532..475666 (-)	135	WP_041200005.1	hypothetical protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44707.46 Da
• Isoelectric Point: 9.9651

>NTDB_id=45286 HPAKL117_RS02270 WP_015085626.1 471576..472778(-) (comB10) [Helicobacter pylori Aklavik117]
MNKSLLKKIGLVIGGVGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEESPKTITTPQPTAPTTT
NVSTNPIITDYSHLNSNLNKQNDTIMHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPVTKPETEYGVDSFSNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNRKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFIAPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=45286 HPAKL117_RS02270 WP_015085626.1 471576..472778(-) (comB10) [Helicobacter pylori Aklavik117]
ATGAATAAGTCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCGTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCACTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTACT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCATGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGTCACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AAATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGTGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAACAATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAGAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTGCCCCTAATTTAGACATCTTTATCCCCAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.518	99.5	0.533