Detailed information NTG0452855

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6H76_RS09550
• Genome accession: NZ_CP065994
• Coordinates: 1870666..1871775 (+)
• Length: 369 a.a.
• NCBI ID: WP_006532557.1
• Uniprot ID: A0ABP2DIJ8
• Organism: Streptococcus infantarius strain FDAARGOS_1019
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1865666..1876775

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6H76_RS09525 (I6H76_09525)	-	1865921..1867030 (+)	1110	WP_006532561.1	aminotransferase	-
I6H76_RS09530 (I6H76_09530)	-	1867109..1867924 (+)	816	WP_006532560.1	transporter substrate-binding domain-containing protein	-
I6H76_RS09535 (I6H76_09535)	rpsU	1868099..1868275 (+)	177	WP_000048058.1	30S ribosomal protein S21	-
I6H76_RS09540 (I6H76_09540)	mscL	1868348..1868731 (-)	384	WP_006532559.1	large conductance mechanosensitive channel protein MscL	-
I6H76_RS09545 (I6H76_09545)	dnaG	1868849..1870657 (+)	1809	WP_043878464.1	DNA primase	-
I6H76_RS09550 (I6H76_09550)	rpoS	1870666..1871775 (+)	1110	WP_006532557.1	RNA polymerase sigma factor RpoD	Regulator
I6H76_RS09555 (I6H76_09555)	-	1871798..1872133 (+)	336	WP_006532556.1	metal-sulfur cluster assembly factor	-
I6H76_RS09560 (I6H76_09560)	cps2T	1872285..1873439 (+)	1155	WP_006532554.1	beta 1-4 rhamnosyltransferase Cps2T	-
I6H76_RS09565 (I6H76_09565)	-	1873429..1874364 (+)	936	WP_006532553.1	glycosyltransferase family 2 protein	-
I6H76_RS09570 (I6H76_09570)	-	1874361..1875167 (+)	807	WP_006532552.1	ABC transporter permease	-
I6H76_RS09575 (I6H76_09575)	-	1875167..1876396 (+)	1230	WP_006532551.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42157.91 Da
• Isoelectric Point: 4.6017

>NTDB_id=452855 I6H76_RS09550 WP_006532557.1 1870666..1871775(+) (rpoS) [Streptococcus infantarius strain FDAARGOS_1019]
MAKEKEITTFNVQVAEFIRNHKKNGTAVDDEVTEKLVIPFSLDADQIDDLLERLTDGGISITDKEGNPSTKYVVEEPKPE
ELTDEELLGNNSAKVNDPVRMYLKEIGVVPLLSSEEEKELAVAVAAGDLQAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFIED

Nucleotide

• Length: 1110 bp

>NTDB_id=452855 I6H76_RS09550 WP_006532557.1 1870666..1871775(+) (rpoS) [Streptococcus infantarius strain FDAARGOS_1019]
ATGGCAAAAGAAAAAGAAATTACTACTTTTAATGTTCAAGTTGCAGAATTTATTCGTAATCATAAAAAGAACGGAACAGC
TGTCGATGACGAAGTGACAGAAAAATTGGTTATTCCATTTTCACTCGATGCTGATCAAATTGATGATCTTTTGGAACGTT
TGACAGACGGTGGTATTTCAATTACTGATAAAGAAGGTAACCCATCAACAAAATATGTGGTTGAAGAACCAAAACCTGAA
GAACTAACTGACGAAGAATTGCTTGGTAACAACTCTGCTAAAGTTAATGACCCAGTTCGTATGTACCTTAAAGAAATTGG
GGTTGTGCCTTTGTTGTCAAGCGAAGAAGAAAAAGAATTGGCAGTTGCAGTCGCAGCAGGCGATCTTCAAGCAAAACAAC
GTTTGGCAGAAGCTAACTTGCGTTTGGTTGTTTCTATTGCTAAACGTTATGTTGGACGTGGTATGCAATTCCTTGACCTT
ATCCAAGAAGGTAACATGGGATTGATGAAAGCTGTTGATAAATTTGATTACTCTAAAGGTTTCAAATTCTCAACTTATGC
AACATGGTGGATTCGTCAGGCTATTACACGTGCGATTGCTGACCAAGCTCGTACAATCCGTATCCCTGTTCACATGGTTG
AAACAATCAACAAACTTGTTCGTGAACAACGTAACCTTCTTCAAGAACTTGGACAAGATCCAACGCCAGAACAAATTGCT
GAACGTATGGATATGACGCCTGATAAAGTTCGTGAAATCTTGAAAATCGCTCAAGAACCTGTTTCTCTTGAAACACCTAT
CGGTGAAGAAGATGACAGCCATCTTGGGGATTTCATTGAAGATGAAGTTATTGAAAATCCAGTAGACTATACAACTCGTG
TTGTTCTTCGTGAACAACTTGATGAAGTCTTAGACACATTGACTGACCGTGAAGAGAACGTCTTGCGCTTGCGTTTTGGT
CTCGATGATGGTAAAATGCGTACACTGGAAGATGTTGGTAAAGTCTTCAACGTGACGCGTGAACGTATTCGTCAGATTGA
AGCTAAAGCACTTCGCAAACTTCGCCATCCGAGCCGTAGCAAACAGCTCCGTGATTTTATCGAAGATTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (214-290)

• Sigma-70, region 4 (Sigma70_r4) (303-356)

• Sigma-70 region 2 (Sigma70_r2) (135-204)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (13-85)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (97-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	45.578	79.675	0.363