Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HT586_RS11810 Genome accession   NZ_CP054482
Coordinates   2262033..2263394 (-) Length   453 a.a.
NCBI ID   WP_096077851.1    Uniprot ID   A0A2G5NU81
Organism   Macrococcoides bohemicum strain 19Msa422     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2257033..2268394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT586_RS11785 (HT586_11765) cysE 2257458..2258099 (-) 642 WP_096077856.1 serine O-acetyltransferase -
  HT586_RS11790 (HT586_11770) gltX 2258348..2259802 (-) 1455 WP_203546580.1 glutamate--tRNA ligase -
  HT586_RS11795 (HT586_11775) ispF 2259813..2260295 (-) 483 WP_203545869.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  HT586_RS11800 (HT586_11780) ispD 2260292..2260972 (-) 681 WP_203545870.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  HT586_RS11805 (HT586_11785) - 2260965..2262020 (-) 1056 WP_096077852.1 PIN/TRAM domain-containing protein -
  HT586_RS11810 (HT586_11790) radA 2262033..2263394 (-) 1362 WP_096077851.1 DNA repair protein RadA Machinery gene
  HT586_RS11815 (HT586_11795) - 2263547..2265970 (-) 2424 WP_096077850.1 ATP-dependent Clp protease ATP-binding subunit -
  HT586_RS11820 (HT586_11800) - 2265983..2266993 (-) 1011 WP_096077849.1 protein arginine kinase -
  HT586_RS11825 (HT586_11805) - 2266983..2267375 (-) 393 WP_096077848.1 UvrB/UvrC motif-containing protein -
  HT586_RS11830 (HT586_11810) - 2267387..2267848 (-) 462 WP_203545871.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50248.92 Da        Isoelectric Point: 7.4857

>NTDB_id=452845 HT586_RS11810 WP_096077851.1 2262033..2263394(-) (radA) [Macrococcoides bohemicum strain 19Msa422]
MAKVKSTFECMACGYQSPKWMGKCPNCGAWNQMEEVIEHKQKGPKTAIHQQDSNSKVEKLKNITKESVPRDHTQMGELDR
VLGGGIVPGSLVLIGGDPGIGKSTLLLQVCAMLSQRHPVLYISGEESVRQTKLRADRLKEDAGELDVYAETNLQIIHETV
KKMQPKFLVIDSIQTIFHPEVTSAPGSVSQVRECTQELMRIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
THHSYRILRAVKNRFGSTNEMGIFEMRNTGLTEVLNPSEMFLEERTKNVAGSTIVATMEGTRPLLVEVQSLVSPTSFHNP
RRMATGIDHNRLTLLMAVLEKKQGYLLQQQDAYVKVAGGVKLDEPAVDLSIIISIASSYNDKPTRGDDCFIGEVGLTGEV
RRVARIEQRVQEAEKLGFKRVIIPKNNIGGWDFPGNIEVIGVTNISEALKLAF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=452845 HT586_RS11810 WP_096077851.1 2262033..2263394(-) (radA) [Macrococcoides bohemicum strain 19Msa422]
TTGGCTAAAGTGAAATCAACTTTTGAATGTATGGCCTGTGGTTATCAGTCCCCAAAATGGATGGGTAAATGTCCGAATTG
TGGCGCCTGGAATCAGATGGAAGAAGTCATTGAACATAAACAAAAAGGACCAAAAACAGCAATACATCAGCAAGATTCAA
ATTCTAAAGTAGAAAAATTAAAAAATATAACGAAAGAAAGTGTGCCAAGAGACCATACGCAAATGGGAGAACTTGACCGT
GTATTAGGTGGCGGTATTGTTCCTGGCTCACTCGTGCTCATTGGTGGAGATCCAGGTATCGGAAAGTCAACATTGTTACT
ACAAGTGTGTGCGATGTTGTCGCAACGTCATCCCGTACTTTATATATCAGGTGAGGAATCGGTAAGACAAACAAAACTCC
GTGCAGACCGCTTAAAGGAAGATGCCGGAGAGTTAGATGTGTATGCGGAGACAAATCTTCAAATCATACATGAAACCGTG
AAGAAGATGCAGCCGAAGTTTTTAGTGATTGACTCTATTCAAACGATTTTTCATCCGGAAGTAACGAGCGCACCAGGTTC
AGTATCTCAAGTGCGTGAATGTACGCAGGAGTTAATGCGTATTGCAAAGCAGATGAATATTGCGACGTTTATCGTCGGTC
ACGTTACAAAAGAAGGGCAAATCGCAGGACCACGTTTACTTGAACATATGGTAGATACTGTACTTTATTTTGAAGGCGAT
ACACATCATAGTTACCGTATTTTACGTGCCGTGAAAAACCGTTTCGGTTCTACAAATGAAATGGGTATATTTGAAATGCG
CAATACTGGCCTTACAGAAGTATTAAACCCGAGTGAAATGTTCTTAGAAGAACGTACGAAGAATGTAGCCGGTTCTACGA
TTGTTGCCACAATGGAAGGCACGCGTCCACTCCTTGTTGAAGTTCAATCATTAGTGTCACCGACATCATTTCATAACCCT
AGACGTATGGCGACAGGTATTGACCATAACCGTTTAACACTGTTAATGGCAGTACTAGAGAAGAAACAAGGTTATCTGTT
ACAGCAACAGGATGCCTATGTCAAAGTAGCAGGTGGCGTGAAATTAGATGAACCTGCTGTTGATTTAAGTATTATTATTA
GCATTGCTTCAAGCTATAATGATAAACCAACCCGTGGCGATGACTGCTTTATCGGAGAAGTAGGTTTGACTGGAGAAGTA
AGACGTGTTGCGCGTATTGAACAACGTGTGCAGGAAGCTGAAAAACTTGGATTCAAACGTGTCATTATTCCAAAGAATAA
TATCGGTGGCTGGGATTTCCCGGGGAATATCGAAGTGATTGGTGTAACAAATATAAGCGAAGCATTAAAGCTTGCATTTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)

AAA domain (AAA_25)

(69-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G5NU81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.202

100

0.687
  radA Streptococcus pneumoniae Rx1

62.031

100

0.62
  radA Streptococcus pneumoniae D39

62.031

100

0.62
  radA Streptococcus pneumoniae R6

62.031

100

0.62
  radA Streptococcus pneumoniae TIGR4

62.031

100

0.62
  radA Streptococcus mitis NCTC 12261

62.031

100

0.62
  radA Streptococcus mitis SK321

62.031

100

0.62