Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   I6H76_RS07540 Genome accession   NZ_CP065994
Coordinates   1461273..1464098 (+) Length   941 a.a.
NCBI ID   WP_006531986.1    Uniprot ID   A0ABP2DHR1
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1456273..1469098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS07495 (I6H76_07495) rpsF 1456461..1456751 (+) 291 WP_006531977.1 30S ribosomal protein S6 -
  I6H76_RS07500 (I6H76_07500) ssb 1456763..1457269 (+) 507 WP_006531978.1 single-stranded DNA-binding protein Machinery gene
  I6H76_RS07505 (I6H76_07505) rpsR 1457330..1457569 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  I6H76_RS07510 (I6H76_07510) - 1457716..1458240 (+) 525 WP_006531979.1 heme biosynthesis HemY N-terminal domain-containing protein -
  I6H76_RS07515 (I6H76_07515) - 1458242..1458466 (+) 225 WP_043878352.1 helix-turn-helix transcriptional regulator -
  I6H76_RS07520 (I6H76_07520) - 1458450..1458596 (+) 147 WP_006531981.1 hypothetical protein -
  I6H76_RS07525 (I6H76_07525) - 1458678..1458899 (+) 222 WP_014335256.1 hypothetical protein -
  I6H76_RS07530 (I6H76_07530) - 1458940..1459596 (-) 657 WP_006531984.1 DUF1129 domain-containing protein -
  I6H76_RS07535 (I6H76_07535) - 1460032..1460976 (-) 945 WP_006531985.1 magnesium transporter CorA family protein -
  I6H76_RS07540 (I6H76_07540) uvrA 1461273..1464098 (+) 2826 WP_006531986.1 excinuclease ABC subunit UvrA Machinery gene
  I6H76_RS10370 (I6H76_07545) - 1464200..1465451 (+) 1252 Protein_1438 MATE family efflux transporter -
  I6H76_RS07550 (I6H76_07550) - 1465587..1466648 (+) 1062 WP_043878353.1 Xaa-Pro peptidase family protein -
  I6H76_RS07555 (I6H76_07555) - 1466679..1467143 (+) 465 WP_006531991.1 deaminase -
  I6H76_RS07560 (I6H76_07560) - 1467199..1467495 (-) 297 WP_006531992.1 hypothetical protein -
  I6H76_RS07565 (I6H76_07565) efp 1467679..1468239 (+) 561 WP_006531993.1 elongation factor P -
  I6H76_RS07570 (I6H76_07570) - 1468310..1468699 (+) 390 WP_014335250.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103914.08 Da        Isoelectric Point: 6.1217

>NTDB_id=452838 I6H76_RS07540 WP_006531986.1 1461273..1464098(+) (uvrA) [Streptococcus infantarius strain FDAARGOS_1019]
MQDKLIIRGARAHNLKNVNVEIPRDKLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARMFLGNMEKPDVDSIEGL
SPAISIDQKTTSKNPRSTVGTTTEINDYLRLLYARVGTPYCINGHGAITASSVEQIVDKVLELPERTRMQILAPVVRRKK
GQHKTIFDRIQKDGYVRVRVDGDIFDISEVPELSKSKIHNIEIVVDRLINKEGIRSRLFDSVEAALRLADGYVIIDTMDG
NELLFSEHYSCPVCGFTVPELEPRLFSFNAPFGSCPTCDGLGNKLEVDLDLVIPDRSKTLREGALAPWNPISSNYYPAML
EQAMETFGVDMDTPFEDLTEEEQNLVLYGSGEREFHFHYVNDFGGERNIDLPFEGVVNNINRRYHETNSDFTRNVMRGYM
NELPCPTCHGYRLNNQALCVRVGGENGLNIGQVSDLSVADHLELLNHLELSENEKTIATPIVKEIKDRLTFLNNVGLNYL
TLSRSAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIDSLKKMRDLGNTLIVVEHDEDTMRQADWLI
DVGPGAGEFGGQIVASGTPEDVAKNKKSITGQYLSGAKEIPVPLERRKGNGRVLGVKGASENNLQNIDVTFPLGKFIAVT
GVSGSGKSTLVNSILKKAVAQKLNRNSAKPGKHKALEGIENIERLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAKTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGTRYNSETLEVHYKDKNIAEILDMTVNDAVEFF
APIPKIARKLQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTDDIARLLKVLQRFVD
DGNTVLVIEHNLDVIKTADYIIDLGPEGGVGGGQIVATGTPEEVAKVKESFTGQYLKDKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=452838 I6H76_RS07540 WP_006531986.1 1461273..1464098(+) (uvrA) [Streptococcus infantarius strain FDAARGOS_1019]
ATGCAAGATAAATTGATTATTCGTGGGGCTCGTGCCCACAATTTAAAAAATGTCAATGTTGAGATTCCGCGGGACAAATT
AGTTGTTGTGACTGGTTTGTCGGGGTCTGGAAAATCAAGTTTGGCATTTGATACGATTTACGCAGAAGGGCAACGTCGTT
ACGTTGAAAGCTTGTCTGCTTATGCCCGCATGTTTCTTGGTAATATGGAAAAACCAGATGTGGATTCGATTGAAGGTCTT
AGCCCAGCTATTTCCATTGACCAAAAAACAACAAGTAAAAACCCGCGCTCTACTGTAGGAACAACGACAGAAATCAATGA
TTATCTGCGCCTTTTGTACGCTCGTGTGGGGACGCCTTACTGTATTAATGGGCACGGTGCTATTACGGCATCATCTGTTG
AACAGATTGTTGATAAGGTATTGGAATTACCTGAGCGCACAAGAATGCAAATTTTAGCGCCTGTTGTGCGTCGCAAAAAA
GGTCAACACAAGACGATTTTTGATCGCATTCAAAAAGATGGTTATGTACGTGTACGCGTGGATGGTGACATTTTTGATAT
TTCAGAAGTTCCTGAGTTATCTAAGAGTAAAATACACAACATCGAGATTGTCGTGGACCGTTTGATTAATAAAGAGGGCA
TTCGTTCACGTCTTTTTGATTCTGTGGAAGCAGCCCTTCGTTTGGCAGATGGTTATGTCATTATCGATACCATGGATGGC
AATGAATTGCTTTTTTCTGAACATTATTCATGTCCAGTATGTGGCTTTACTGTTCCCGAATTAGAACCACGTTTATTTTC
ATTTAATGCGCCATTTGGTTCATGTCCAACCTGTGATGGTTTGGGAAATAAATTGGAAGTCGACTTGGATTTGGTGATTC
CTGACCGCAGTAAAACGCTTCGTGAGGGGGCTTTAGCACCATGGAATCCAATCTCATCAAACTACTATCCTGCTATGCTT
GAGCAAGCTATGGAAACTTTTGGTGTTGATATGGATACGCCTTTTGAAGACTTGACTGAAGAAGAGCAAAATCTTGTACT
TTACGGTTCTGGTGAGCGTGAATTCCATTTCCACTATGTCAATGATTTCGGTGGTGAACGCAATATTGATCTTCCTTTTG
AGGGTGTTGTTAACAATATCAATCGTCGTTACCATGAGACAAATAGTGATTTTACCCGCAATGTCATGCGCGGCTACATG
AATGAATTGCCATGTCCAACTTGTCATGGTTACCGTTTGAATAATCAAGCGCTCTGTGTTCGTGTGGGTGGTGAAAATGG
TTTGAATATTGGGCAAGTGTCTGATTTGTCAGTTGCTGACCACTTGGAACTCTTGAATCATCTAGAACTCTCTGAAAATG
AAAAAACGATTGCCACACCAATCGTTAAGGAAATCAAAGACCGTTTAACTTTCTTAAATAACGTGGGATTGAATTATTTG
ACCTTGTCACGTTCTGCGGGGACTTTGTCAGGTGGTGAAAGTCAACGTATTCGCTTGGCGACACAAATTGGTTCAAACTT
GTCGGGTGTCCTTTATATCCTTGATGAACCGTCAATTGGTCTTCATCAACGTGACAATGATCGCTTGATTGATAGCTTGA
AGAAGATGCGTGATCTTGGTAATACCTTGATTGTTGTTGAACACGATGAAGACACTATGCGTCAAGCTGACTGGCTGATT
GATGTCGGACCAGGTGCGGGTGAATTTGGTGGACAAATCGTGGCATCTGGTACGCCAGAAGATGTTGCCAAAAATAAAAA
ATCAATTACAGGGCAGTATTTGTCTGGAGCAAAAGAAATTCCTGTGCCACTAGAACGTCGTAAAGGAAATGGGCGCGTGC
TTGGTGTCAAAGGTGCTTCTGAAAATAACCTGCAAAATATTGATGTGACTTTCCCACTTGGTAAATTCATTGCGGTGACA
GGTGTTTCGGGTTCTGGAAAATCAACCTTGGTTAACAGTATTTTGAAAAAAGCTGTTGCTCAAAAATTGAATCGCAATTC
TGCCAAACCTGGTAAACACAAGGCACTTGAGGGCATTGAAAACATTGAACGCTTGATTGACATTGACCAAAGCCCAATCG
GTCGTACGCCGCGTTCAAATCCTGCAACTTACACAGGTGTTTTTGATGATATTCGTGACCTTTTTGCTAAGACCAATGAA
GCTAAGATTCGTGGTTACAAAAAAGGACGTTTCTCATTTAACGTCAAAGGTGGACGTTGCGAGGCTTGCTCTGGTGACGG
AATTATCAAGATTGAAATGCACTTCTTGCCAGATGTTTACGTACCTTGCGAGGTTTGTCATGGCACACGTTATAACAGTG
AAACGCTTGAAGTTCATTACAAAGACAAAAATATCGCTGAAATTCTTGATATGACAGTCAATGATGCGGTTGAATTCTTT
GCACCAATCCCTAAAATCGCACGCAAATTGCAAACTATCAAAGACGTTGGACTTGGTTATGTTACTCTTGGACAACCAGC
CACAACACTGTCTGGTGGTGAAGCACAGCGTATGAAATTAGCGAGTGAACTTCACAAACGCTCAACTGGTAAGAGCCTTT
ATATCCTTGATGAACCAACGACAGGTCTTCACACAGATGACATTGCTCGTCTACTTAAAGTCCTTCAACGTTTCGTGGAT
GATGGAAATACCGTGCTTGTTATTGAACACAATCTTGATGTGATTAAGACAGCTGACTATATTATCGACCTTGGACCAGA
AGGCGGTGTTGGTGGCGGACAAATCGTTGCCACAGGCACACCAGAAGAAGTCGCCAAAGTCAAAGAATCCTTCACAGGAC
AATATTTGAAAGATAAATTGAAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(624-860)

UvrA interaction domain (UvrA_inter)

(132-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

84.681

99.894

0.846
  uvrA Streptococcus pneumoniae TIGR4

84.681

99.894

0.846
  uvrA Streptococcus pneumoniae D39

84.681

99.894

0.846