Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   HT586_RS00495 Genome accession   NZ_CP054482
Coordinates   87839..89479 (-) Length   546 a.a.
NCBI ID   WP_407943981.1    Uniprot ID   -
Organism   Macrococcoides bohemicum strain 19Msa422     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 82839..94479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT586_RS00455 (HT586_00450) - 83019..83786 (-) 768 WP_203545961.1 hypothetical protein -
  HT586_RS00460 (HT586_00455) - 83761..84243 (-) 483 WP_133353681.1 hypothetical protein -
  HT586_RS00465 (HT586_00460) - 84249..85145 (-) 897 WP_203545962.1 HTH domain-containing protein -
  HT586_RS00470 (HT586_00465) - 85312..85755 (-) 444 WP_133353683.1 JAB domain-containing protein -
  HT586_RS00475 (HT586_00470) - 85777..86280 (-) 504 WP_133353684.1 DUF1643 domain-containing protein -
  HT586_RS00480 (HT586_00475) - 86299..86625 (-) 327 WP_203545963.1 DUF960 family protein -
  HT586_RS00485 (HT586_00480) - 86688..87047 (-) 360 WP_165958605.1 SAUGI family uracil-DNA glycosylase inhibitor -
  HT586_RS00490 (HT586_00485) - 87528..87722 (+) 195 WP_203545933.1 hypothetical protein -
  HT586_RS00495 (HT586_00490) ccrB 87839..89479 (-) 1641 WP_407943981.1 recombinase family protein Machinery gene
  HT586_RS00500 (HT586_00495) - 89485..90831 (-) 1347 WP_203545965.1 recombinase family protein -
  HT586_RS00505 (HT586_00500) - 91001..92875 (-) 1875 WP_203545966.1 DUF927 domain-containing protein -
  HT586_RS00510 (HT586_00505) - 92956..93270 (-) 315 WP_203545967.1 hypothetical protein -
  HT586_RS00515 (HT586_00510) - 93257..93844 (-) 588 WP_203545968.1 hypothetical protein -

Sequence

Protein


Download         Length: 546 a.a.        Molecular weight: 62333.53 Da        Isoelectric Point: 9.3479

>NTDB_id=452820 HT586_RS00495 WP_407943981.1 87839..89479(-) (ccrB) [Macrococcoides bohemicum strain 19Msa422]
MEDYIMNKKTAIYARVSTAPQAEEGFSIDGQIALLKNICANKNYDVYDVYVDRGISGKNMNRPELLRMNEDAKNGMFDII
IVYNSSRLARNTSDLLRMVDEYQKHNIEYISHKENFDTTTAAGKLMLQIMASMAEYERNQIVENVILGQSKRARNGYYNG
NNLLGYDKIPNDKKHLSVNESEAEIVRRIFNEYANGKGYRAIANGLNKDGFRTKKGNPFDIAGVKYILNNVFYIGQIKFQ
QYIGWNEKRRKGYNPNPIIAEGKHEPIIGKDLWDKVHRRMSEMSKKPQVHGKGTNVLTGLIRCPVCGHAHAAANTVNTVK
GEKKKIRYYSCSQFKNKGAAVCSANSVRADLIEPYVMNRVIEVINNEKILEKVVEKANERIQEQPVQIDRNINIKKAELV
ELQTKLNNLTVALASSPDLAPVLKDSINEYQDNITKIENEILLLTEKLKSEHIPTISVDEVKAALKAIFKDVERLEKHQL
KALYLSVIEEIHFRKHKEPGKKYEFFITLKITPEVLKEVFNDKQPEEAPLSASSLFLSNNILYLEI

Nucleotide


Download         Length: 1641 bp        

>NTDB_id=452820 HT586_RS00495 WP_407943981.1 87839..89479(-) (ccrB) [Macrococcoides bohemicum strain 19Msa422]
ATGGAGGATTATATTATGAATAAAAAAACAGCAATCTATGCAAGGGTATCAACAGCCCCTCAAGCTGAAGAAGGATTTAG
TATTGATGGACAAATCGCATTATTAAAAAATATATGTGCTAATAAAAATTATGACGTTTATGATGTTTATGTTGATAGAG
GTATAAGTGGGAAGAACATGAATCGCCCTGAACTCCTACGCATGAATGAAGATGCGAAAAATGGAATGTTTGATATTATA
ATAGTGTATAATTCGAGCCGCTTAGCGCGTAACACATCAGATTTATTAAGAATGGTTGATGAATACCAAAAGCATAACAT
TGAATACATTAGTCATAAAGAAAATTTTGATACTACAACTGCTGCCGGTAAGTTAATGCTACAAATAATGGCAAGTATGG
CAGAATATGAACGTAACCAAATCGTAGAGAACGTAATCTTAGGCCAATCAAAGAGAGCAAGAAATGGTTATTATAATGGG
AATAATCTGCTAGGCTATGACAAGATACCTAACGATAAGAAGCACTTATCAGTCAATGAATCAGAAGCTGAAATTGTTAG
ACGTATATTCAATGAATATGCCAATGGTAAAGGTTATCGTGCAATTGCGAATGGTCTGAACAAAGATGGCTTTAGAACAA
AGAAAGGTAATCCGTTCGATATTGCCGGTGTGAAGTATATCTTGAATAATGTATTTTATATTGGGCAAATCAAGTTCCAA
CAGTACATCGGTTGGAATGAAAAAAGACGTAAAGGATATAACCCTAATCCTATTATCGCAGAAGGTAAGCACGAACCAAT
CATTGGAAAAGATCTGTGGGATAAAGTTCATCGCCGTATGTCTGAAATGAGCAAGAAGCCTCAAGTTCATGGCAAAGGGA
CAAATGTATTAACTGGCTTGATCCGATGCCCCGTCTGCGGCCATGCACATGCTGCAGCCAATACCGTCAACACGGTAAAG
GGTGAGAAGAAAAAGATTCGTTATTACTCATGTAGTCAATTTAAAAATAAAGGTGCAGCTGTATGTTCAGCAAATTCGGT
ACGAGCTGACCTTATCGAACCTTATGTCATGAATAGAGTCATCGAAGTAATTAATAATGAAAAAATTTTAGAAAAAGTAG
TTGAAAAAGCAAATGAACGAATTCAGGAACAACCCGTACAGATAGATCGTAACATTAACATCAAAAAAGCTGAACTGGTT
GAATTACAAACAAAGCTAAATAACTTAACTGTAGCTTTAGCATCTTCGCCTGACTTAGCTCCCGTACTTAAAGACAGTAT
CAATGAATATCAAGATAACATCACCAAAATCGAAAACGAAATACTACTACTCACTGAAAAGCTTAAAAGTGAGCATATCC
CCACTATATCAGTTGATGAAGTTAAGGCAGCACTGAAAGCTATTTTCAAAGACGTAGAACGTTTGGAAAAGCATCAACTT
AAAGCTCTATATTTATCAGTTATTGAAGAAATTCACTTCCGTAAGCACAAAGAACCTGGAAAGAAATATGAATTCTTTAT
AACACTCAAGATCACACCAGAAGTATTAAAAGAAGTATTCAATGATAAACAACCAGAGGAAGCGCCACTCAGCGCTTCCT
CTTTATTTTTGTCTAATAACATACTATATCTAGAGATATGA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-157)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(296-360)

Recombinase (Recombinase)

(181-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

52.222

98.901

0.516