Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   HT586_RS00250 Genome accession   NZ_CP054482
Coordinates   45717..47342 (-) Length   541 a.a.
NCBI ID   WP_203545934.1    Uniprot ID   -
Organism   Macrococcoides bohemicum strain 19Msa422     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 40717..52342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT586_RS00200 (HT586_00200) - 40756..41259 (-) 504 WP_203545924.1 hypothetical protein -
  HT586_RS00205 (HT586_00205) - 41231..41413 (-) 183 WP_203545925.1 hypothetical protein -
  HT586_RS00210 (HT586_00210) - 41421..41669 (-) 249 WP_203545926.1 hypothetical protein -
  HT586_RS00215 (HT586_00215) - 41644..42126 (-) 483 WP_203545927.1 hypothetical protein -
  HT586_RS00220 (HT586_00220) - 42132..43028 (-) 897 WP_203545928.1 HTH domain-containing protein -
  HT586_RS00225 (HT586_00225) - 43195..43638 (-) 444 WP_203545929.1 JAB domain-containing protein -
  HT586_RS00230 (HT586_00230) - 43660..44163 (-) 504 WP_203545930.1 DUF1643 domain-containing protein -
  HT586_RS00235 (HT586_00235) - 44182..44508 (-) 327 WP_203545931.1 DUF960 family protein -
  HT586_RS00240 (HT586_00240) - 44571..44930 (-) 360 WP_203545932.1 SAUGI family uracil-DNA glycosylase inhibitor -
  HT586_RS00245 (HT586_00245) - 45406..45600 (+) 195 WP_203545933.1 hypothetical protein -
  HT586_RS00250 (HT586_00250) ccrB 45717..47342 (-) 1626 WP_203545934.1 recombinase family protein Machinery gene
  HT586_RS00255 (HT586_00255) - 47345..48712 (-) 1368 WP_203545935.1 recombinase family protein -
  HT586_RS00260 (HT586_00260) - 48926..50473 (-) 1548 WP_203545936.1 DNA primase family protein -
  HT586_RS00265 (HT586_00265) - 50486..51109 (-) 624 WP_203545937.1 hypothetical protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 61792.02 Da        Isoelectric Point: 9.5551

>NTDB_id=452819 HT586_RS00250 WP_203545934.1 45717..47342(-) (ccrB) [Macrococcoides bohemicum strain 19Msa422]
MNKKAAIYARVSTVSQAEEGFSIDGQIALLKDICAKNKYDVYDIYVDRGISGKNMNRPALVQMNEDARNGMFDVIMVYKA
NRLARNTSDLLKMVEEYQKYNIEFISHTEKFDTTNAAGKLMLQIMASMAEYERNQIVENVILGQSKRARNGYYNGNNLLG
YNKIPNDKKHLSVNESEAEIVRRIFNEYANGKGYRAIANGLNKDGLRTKKGNPFDIAGVKYILNNVFYIGQIKFQQYIGW
NEKRRKGYNPNPIIAEGKHEPIIEKDLWNKVHRRMSEMSKKPQVHGKGTNVLTGLIRCPVCGHAHAAANTVNTIKGEKKK
IRYYSCSQFKNKGASVCSANSVRADLIEPYVMNRIVEVINNDKILEKVVEKANERLREQPVQIDRNINIKKAELDELQTK
LNNLTVALASSPDLAPVLKDSINEYQDNITKIENEILLLTEKLKSEHIPTISVDEVKAALKDIFKDVERLEKHQLKALYL
SVIEEIHFRKHKEPGKKYEFFITLKITPEVLKEVFNDKQPEEAPLSASSLFLSNNILYLEI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=452819 HT586_RS00250 WP_203545934.1 45717..47342(-) (ccrB) [Macrococcoides bohemicum strain 19Msa422]
ATGAATAAAAAAGCAGCAATCTACGCAAGGGTATCAACAGTATCTCAAGCTGAAGAGGGTTTTAGTATTGATGGACAGAT
CGCATTATTAAAAGATATATGTGCTAAAAATAAATACGACGTCTATGATATTTATGTCGATAGAGGTATTAGTGGTAAGA
ATATGAATCGACCGGCACTTGTACAAATGAATGAAGATGCGAGAAACGGAATGTTCGATGTCATTATGGTTTATAAAGCA
AACCGTTTGGCACGTAACACGTCAGATTTATTAAAAATGGTTGAAGAATACCAAAAGTATAATATCGAATTCATTAGTCA
CACGGAAAAATTCGACACTACAAATGCTGCTGGCAAACTAATGTTACAAATAATGGCGAGTATGGCAGAATATGAACGTA
ACCAAATCGTAGAGAACGTGATCTTAGGGCAATCAAAGAGAGCAAGAAATGGTTATTATAACGGGAATAATCTGCTAGGT
TATAACAAAATACCTAACGATAAGAAGCACTTATCAGTCAATGAATCAGAAGCTGAAATTGTTAGACGGATATTCAATGA
ATATGCTAATGGTAAAGGTTATCGTGCAATTGCGAATGGTCTGAACAAAGATGGTCTTAGAACAAAGAAAGGTAATCCGT
TCGATATTGCTGGTGTGAAGTACATCCTTAATAATGTATTTTATATCGGTCAAATCAAGTTCCAACAGTACATCGGGTGG
AATGAGAAGAGACGTAAAGGGTATAACCCTAATCCTATTATCGCTGAAGGTAAGCACGAACCAATCATTGAAAAAGATCT
GTGGAATAAGGTTCATCGCCGTATGTCTGAAATGAGCAAGAAGCCTCAAGTTCATGGCAAAGGGACAAATGTATTAACTG
GCTTGATCCGATGCCCCGTCTGCGGCCATGCACATGCTGCAGCCAATACCGTCAACACGATAAAGGGTGAGAAGAAAAAG
ATTCGTTATTACTCATGTAGTCAATTTAAAAATAAAGGTGCGTCTGTCTGTTCAGCAAATTCAGTACGAGCTGATCTTAT
AGAACCTTACGTCATGAATAGAATCGTCGAAGTAATTAACAATGATAAAATTCTTGAAAAAGTAGTTGAGAAAGCAAATG
AAAGACTCCGAGAACAACCCGTCCAGATAGATCGTAACATCAACATCAAAAAAGCTGAACTGGATGAATTACAAACAAAG
CTCAATAACTTAACTGTAGCGTTAGCATCTTCGCCTGACTTAGCTCCCGTACTTAAAGATAGTATCAATGAATATCAGGA
TAACATCACTAAAATCGAAAACGAAATACTACTACTCACTGAAAAGCTTAAAAGTGAGCATATCCCCACTATATCAGTTG
ATGAAGTTAAGGCAGCACTGAAAGATATTTTCAAAGACGTAGAACGTTTGGAAAAGCATCAACTTAAAGCTCTATATTTA
TCAGTCATTGAAGAAATTCACTTCCGTAAGCACAAAGAACCTGGAAAGAAATATGAATTCTTTATAACACTCAAGATCAC
ACCGGAAGTCTTAAAAGAAGTATTCAATGATAAACAACCAGAGGAAGCGCCACTCAGCGCTTCCTCTTTATTTTTGTCTA
ATAACATACTATACCTAGAGATATGA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(176-277)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(291-355)

Resolvase, N terminal domain (Resolvase)

(5-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

52.778

99.815

0.527