Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6H76_RS03585 Genome accession   NZ_CP065994
Coordinates   713473..714081 (+) Length   202 a.a.
NCBI ID   WP_043878262.1    Uniprot ID   -
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 708473..719081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS03560 (I6H76_03560) - 709052..710566 (-) 1515 WP_006531164.1 cell division site-positioning protein MapZ family protein -
  I6H76_RS03565 (I6H76_03565) - 710630..711802 (-) 1173 WP_006531163.1 class I SAM-dependent RNA methyltransferase -
  I6H76_RS03575 (I6H76_03575) gpsB 712423..712752 (-) 330 WP_006531162.1 cell division regulator GpsB -
  I6H76_RS03580 (I6H76_03580) - 712880..713398 (-) 519 WP_006531161.1 DUF1273 domain-containing protein -
  I6H76_RS03585 (I6H76_03585) recU 713473..714081 (+) 609 WP_043878262.1 Holliday junction resolvase RecU Machinery gene
  I6H76_RS03590 (I6H76_03590) pbp1a 714068..716290 (+) 2223 WP_006531159.1 penicillin-binding protein PBP1A -
  I6H76_RS03595 (I6H76_03595) pepC 716377..717714 (-) 1338 WP_006531158.1 aminopeptidase C -
  I6H76_RS03600 (I6H76_03600) nadE 717943..718767 (-) 825 WP_006531157.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23275.73 Da        Isoelectric Point: 9.9080

>NTDB_id=452792 I6H76_RS03585 WP_043878262.1 713473..714081(+) (recU) [Streptococcus infantarius strain FDAARGOS_1019]
MVNYPHHLIRKQAAPASRKNTKSTINFANRGMSFEAAINETNNYYLSRDIAVVHKKPTPIQIVKVDYPKRSRAKIVEAYF
RQASTTDYSGVYKGRYIDFEAKETRQKTSMPLKNFHAHQIEHMEHVLKQDGICFILLHFSTLKETYFLPASALVDFYQIN
LGTKSMPLDYIRKNGYMVTTSSLPQVPYLDIIDQKILGGDHN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=452792 I6H76_RS03585 WP_043878262.1 713473..714081(+) (recU) [Streptococcus infantarius strain FDAARGOS_1019]
ATGGTTAATTACCCTCATCATCTTATTCGAAAACAAGCAGCCCCAGCTTCTAGGAAGAACACAAAATCAACGATTAACTT
TGCTAATCGTGGGATGAGTTTTGAAGCAGCAATCAATGAAACTAATAATTACTATTTATCTCGTGATATTGCTGTCGTTC
ACAAAAAACCAACCCCAATTCAAATTGTAAAAGTTGATTATCCCAAAAGAAGCCGTGCCAAAATTGTAGAAGCTTACTTT
CGCCAAGCATCCACGACCGATTATTCTGGTGTCTACAAAGGACGCTACATTGACTTTGAAGCGAAAGAAACGCGACAAAA
GACTTCCATGCCCTTAAAAAACTTCCACGCTCACCAGATTGAGCACATGGAACATGTCTTAAAGCAAGACGGCATCTGCT
TTATACTACTTCACTTTTCGACACTTAAGGAAACTTATTTCTTACCTGCTAGCGCTCTAGTAGACTTTTACCAAATCAAC
CTCGGCACCAAATCCATGCCACTTGATTATATCAGAAAAAATGGGTATATGGTGACAACAAGTTCACTCCCTCAAGTTCC
TTATTTGGACATTATCGATCAAAAAATATTAGGCGGTGATCACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.254

97.525

0.49