Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   HT132_RS13560 Genome accession   NZ_CP054479
Coordinates   2806554..2807018 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2801554..2812018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS13535 (HT132_13535) - 2802052..2802609 (-) 558 WP_022553416.1 hypothetical protein -
  HT132_RS13540 (HT132_13540) fadH 2802723..2803487 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  HT132_RS13545 (HT132_13545) - 2803631..2804494 (+) 864 WP_022553417.1 metallophosphoesterase -
  HT132_RS13550 (HT132_13550) - 2804569..2805063 (+) 495 WP_089072484.1 L,D-transpeptidase family protein -
  HT132_RS13555 (HT132_13555) - 2805139..2806431 (+) 1293 WP_014417606.1 MFS transporter -
  HT132_RS13560 (HT132_13560) kre 2806554..2807018 (+) 465 WP_003154622.1 YkyB family protein Regulator
  HT132_RS13565 (HT132_13565) cheV 2807061..2807972 (-) 912 WP_014417604.1 chemotaxis protein CheV -
  HT132_RS13570 (HT132_13570) - 2808161..2808322 (+) 162 WP_007409608.1 hypothetical protein -
  HT132_RS13575 (HT132_13575) - 2808523..2809692 (+) 1170 WP_007611083.1 aminotransferase A -
  HT132_RS13580 (HT132_13580) - 2809717..2811537 (-) 1821 WP_021493759.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=452791 HT132_RS13560 WP_003154622.1 2806554..2807018(+) (kre) [Bacillus amyloliquefaciens strain R8-25]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=452791 HT132_RS13560 WP_003154622.1 2806554..2807018(+) (kre) [Bacillus amyloliquefaciens strain R8-25]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCTGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929