Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   HT132_RS13460 Genome accession   NZ_CP054479
Coordinates   2790556..2791152 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2785556..2796152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS13435 (HT132_13435) mobB 2785932..2786453 (-) 522 WP_029973679.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  HT132_RS13440 (HT132_13440) glp 2786414..2787706 (-) 1293 WP_022553413.1 gephyrin-like molybdotransferase Glp -
  HT132_RS13445 (HT132_13445) - 2787724..2788743 (-) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  HT132_RS13450 (HT132_13450) - 2788795..2789397 (-) 603 WP_014417620.1 molybdenum cofactor guanylyltransferase -
  HT132_RS13455 (HT132_13455) - 2789543..2790535 (+) 993 WP_021493753.1 hypothetical protein -
  HT132_RS13460 (HT132_13460) rok 2790556..2791152 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  HT132_RS13465 (HT132_13465) - 2791605..2792063 (-) 459 WP_174532582.1 TlpA disulfide reductase family protein -
  HT132_RS13470 (HT132_13470) - 2792351..2793157 (+) 807 WP_174532583.1 mechanosensitive ion channel family protein -
  HT132_RS13475 (HT132_13475) - 2793191..2793436 (-) 246 WP_003154596.1 YkuS family protein -
  HT132_RS13480 (HT132_13480) - 2793497..2794621 (-) 1125 WP_115940829.1 N-acetyldiaminopimelate deacetylase -
  HT132_RS13485 (HT132_13485) dapD 2794692..2795402 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  HT132_RS13490 (HT132_13490) - 2795484..2795939 (-) 456 WP_014417614.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=452790 HT132_RS13460 WP_003154591.1 2790556..2791152(-) (rok) [Bacillus amyloliquefaciens strain R8-25]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=452790 HT132_RS13460 WP_003154591.1 2790556..2791152(-) (rok) [Bacillus amyloliquefaciens strain R8-25]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCGGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCGGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843