Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HT132_RS13350 Genome accession   NZ_CP054479
Coordinates   2770370..2770654 (-) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2765370..2775654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS13330 (HT132_13330) ade 2765476..2767209 (-) 1734 WP_029973685.1 adenine deaminase -
  HT132_RS13335 (HT132_13335) ktrC 2767358..2768023 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  HT132_RS13340 (HT132_13340) - 2768064..2768891 (-) 828 WP_014417635.1 gamma-glutamylcyclotransferase -
  HT132_RS13345 (HT132_13345) - 2768893..2770197 (-) 1305 WP_014417634.1 ATP-binding protein -
  HT132_RS13350 (HT132_13350) abrB 2770370..2770654 (-) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  HT132_RS13355 (HT132_13355) mreBH 2770925..2771932 (+) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  HT132_RS13360 (HT132_13360) - 2772004..2772138 (+) 135 WP_003154559.1 protein YkpC -
  HT132_RS13365 (HT132_13365) - 2772239..2773471 (+) 1233 WP_007409644.1 aminopeptidase -
  HT132_RS13370 (HT132_13370) - 2773502..2774410 (-) 909 WP_053285008.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=452789 HT132_RS13350 WP_024085249.1 2770370..2770654(-) (abrB) [Bacillus amyloliquefaciens strain R8-25]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=452789 HT132_RS13350 WP_024085249.1 2770370..2770654(-) (abrB) [Bacillus amyloliquefaciens strain R8-25]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543