Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HT132_RS09965 Genome accession   NZ_CP054479
Coordinates   1963439..1964047 (-) Length   202 a.a.
NCBI ID   WP_014418235.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1958439..1969047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS09945 (HT132_09945) dnaD 1958675..1959373 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  HT132_RS09950 (HT132_09950) nth 1959392..1960051 (+) 660 WP_007612187.1 endonuclease III -
  HT132_RS09955 (HT132_09955) - 1960048..1960539 (+) 492 WP_012117839.1 YpoC family protein -
  HT132_RS09960 (HT132_09960) - 1960617..1963400 (-) 2784 WP_032863588.1 PBP1A family penicillin-binding protein -
  HT132_RS09965 (HT132_09965) recU 1963439..1964047 (-) 609 WP_014418235.1 Holliday junction resolvase RecU Machinery gene
  HT132_RS09970 (HT132_09970) - 1964089..1965050 (+) 962 Protein_1928 DUF2515 domain-containing protein -
  HT132_RS09975 (HT132_09975) sspM 1965094..1965198 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  HT132_RS09980 (HT132_09980) - 1965404..1965649 (+) 246 WP_014418233.1 DUF5446 family protein -
  HT132_RS09985 (HT132_09985) - 1965695..1966063 (+) 369 WP_014418232.1 YppE family protein -
  HT132_RS09990 (HT132_09990) - 1966102..1966284 (-) 183 WP_003153532.1 YppF family protein -
  HT132_RS09995 (HT132_09995) - 1966471..1966938 (+) 468 WP_061862316.1 YppG family protein -
  HT132_RS10000 (HT132_10000) - 1966968..1967381 (-) 414 WP_007612169.1 Hsp20/alpha crystallin family protein -
  HT132_RS10005 (HT132_10005) - 1967520..1968026 (+) 507 WP_012117833.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=452783 HT132_RS09965 WP_014418235.1 1963439..1964047(-) (recU) [Bacillus amyloliquefaciens strain R8-25]
MIRYPNGKTFQPNKTVSSQNSQKRTHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=452783 HT132_RS09965 WP_014418235.1 1963439..1964047(-) (recU) [Bacillus amyloliquefaciens strain R8-25]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGACCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AAGAACGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

91.457

98.515

0.901