Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | HT132_RS08650 | Genome accession | NZ_CP054479 |
| Coordinates | 1677910..1678947 (+) | Length | 345 a.a. |
| NCBI ID | WP_053284924.1 | Uniprot ID | A0AAP4DGT6 |
| Organism | Bacillus amyloliquefaciens strain R8-25 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1672910..1683947
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HT132_RS08630 (HT132_08630) | - | 1673395..1674225 (+) | 831 | WP_025649847.1 | STAS domain-containing protein | - |
| HT132_RS08635 (HT132_08635) | - | 1674263..1675564 (-) | 1302 | WP_029973873.1 | hemolysin family protein | - |
| HT132_RS08640 (HT132_08640) | - | 1675710..1676660 (+) | 951 | WP_014418379.1 | magnesium transporter CorA family protein | - |
| HT132_RS08645 (HT132_08645) | comGA | 1676853..1677923 (+) | 1071 | WP_014418378.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| HT132_RS08650 (HT132_08650) | comGB | 1677910..1678947 (+) | 1038 | WP_053284924.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| HT132_RS08655 (HT132_08655) | comGC | 1678952..1679260 (+) | 309 | WP_014418376.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| HT132_RS08660 (HT132_08660) | comGD | 1679250..1679687 (+) | 438 | WP_095061019.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| HT132_RS08665 (HT132_08665) | comGE | 1679671..1679985 (+) | 315 | WP_017418140.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| HT132_RS08670 (HT132_08670) | comGF | 1679999..1680394 (+) | 396 | WP_025649850.1 | competence type IV pilus minor pilin ComGF | - |
| HT132_RS08675 (HT132_08675) | comGG | 1680395..1680772 (+) | 378 | WP_017418138.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| HT132_RS08680 (HT132_08680) | - | 1680829..1681008 (+) | 180 | WP_003153093.1 | YqzE family protein | - |
| HT132_RS08685 (HT132_08685) | - | 1681049..1681378 (-) | 330 | WP_012117979.1 | DUF3889 domain-containing protein | - |
| HT132_RS08690 (HT132_08690) | tapA | 1681637..1682308 (+) | 672 | WP_014418371.1 | amyloid fiber anchoring/assembly protein TapA | - |
| HT132_RS08695 (HT132_08695) | sipW | 1682280..1682864 (+) | 585 | WP_174532489.1 | signal peptidase I SipW | - |
| HT132_RS08700 (HT132_08700) | tasA | 1682929..1683714 (+) | 786 | WP_007408329.1 | biofilm matrix protein TasA | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39552.87 Da Isoelectric Point: 9.6787
>NTDB_id=452774 HT132_RS08650 WP_053284924.1 1677910..1678947(+) (comGB) [Bacillus amyloliquefaciens strain R8-25]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGDLLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATALIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGDLLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATALIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=452774 HT132_RS08650 WP_053284924.1 1677910..1678947(+) (comGB) [Bacillus amyloliquefaciens strain R8-25]
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTAAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCTGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGACTTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TCATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTGATCTTTGCGTTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATCCCCCTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGCTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCGGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTAAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCTGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGACTTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TCATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTGATCTTTGCGTTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATCCCCCTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGCTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCGGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
65.944 |
93.623 |
0.617 |