Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   I6H76_RS02355 Genome accession   NZ_CP065994
Coordinates   464352..467594 (-) Length   1080 a.a.
NCBI ID   WP_006532346.1    Uniprot ID   A0ABP2DKM4
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 459352..472594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS02345 (I6H76_02345) - 459488..460633 (+) 1146 WP_006532348.1 cobalamin-independent methionine synthase II family protein -
  I6H76_RS02350 (I6H76_02350) rexA 460736..464362 (-) 3627 WP_006532347.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I6H76_RS02355 (I6H76_02355) rexB 464352..467594 (-) 3243 WP_006532346.1 ATP-dependent nuclease subunit B Machinery gene
  I6H76_RS02360 (I6H76_02360) - 467747..468301 (+) 555 WP_232617589.1 transposase -
  I6H76_RS02365 (I6H76_02365) - 468420..469385 (+) 966 WP_006531555.1 IS3 family transposase -
  I6H76_RS02370 (I6H76_02370) pheT 469537..471942 (-) 2406 WP_043878417.1 phenylalanine--tRNA ligase subunit beta -
  I6H76_RS02375 (I6H76_02375) - 472012..472536 (-) 525 WP_006532344.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 124476.10 Da        Isoelectric Point: 5.0756

>NTDB_id=452772 I6H76_RS02355 WP_006532346.1 464352..467594(-) (rexB) [Streptococcus infantarius strain FDAARGOS_1019]
MKLLYTDIQFDMTEILARKAMEEAKAGKRVFYIAPNSLSFEKERAVLELLPDQASFAITITRFAQMARYFVLNEPQTKET
IDDNGLAMIFYRALSHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTVLDLKELHSAEKQEDLVKIFLAVNDILLA
NQYDNQSKIAFFTKQVASGHLDDALENVVLVIDGFTRFSAEEEDLVSLLEEKCAQVIIGTYSSQKAYKATFSTGNVYQAS
LDFLRSLAAKFQTQPEYVESSQKSQEAFAKLSKLFEAKHDFTTSDITLTHDDKEHYAIWDVINQKEEVEHVAKAIRHKLH
QGYRYKDILVLLGDVDSYRLQIGKIFDKYEIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRMEDVVNLLKTGLYGSFTQ
DDLDLFEQYLIYADIKGQSKFAKEFTIAYKGEEHLAYINGMREQIMAPLLTLFKAQKQLGSSLLEKLMTFLRAISLPENL
ERTVATFSENEQEKHEQVWRTFTGILEQFQTIFGQEKLSLDEFLALLRSGMLAAQYRVVPASVDVVSVKSYDLVEPHTNK
FVFALGMTQSHFPKIAQNRSLISDEERAKVNETTADNQRFDVISRENIKKNHFAALSLFNSATEELVLSLPQIANESEDK
ESSYLAELASFGVPVLVKGRNRLSTDAEDIGNYKAFLSRVIEVNRLAIEEDRELSKEEQTFWSVAVRYLRKKLANEGVEL
PLIKDNMQTKPVSAEVIETHFPSDEPINLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKDA
SDQAFDDKLNRAIQTTNAEDAFKFVYEEDEESRYSLTVLEDIARSTATILRQDAQIQVENEEEPFELMLANAVRIRGIID
RVDRLSDGSLGVVDYKSSHNTFDIQKFYNGLNPQLVTYMQALRDKKIKSESDKIFGAMYLHMQEPKVDLSSVATTEKILE
NLSKELRYRGLFLEDEKGYLSNGNYHLNDSVYTQEELDILLAYNQKLFLQAAEQIKQGHFLINPYSEDGKTVKGDQLKAI
TRFEADRHMPYARKWFKLPRKDRRQGFLSLMQEEEEKDDL

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=452772 I6H76_RS02355 WP_006532346.1 464352..467594(-) (rexB) [Streptococcus infantarius strain FDAARGOS_1019]
ATGAAATTATTATATACAGATATTCAGTTTGATATGACTGAAATTTTGGCAAGAAAAGCGATGGAAGAGGCTAAAGCTGG
TAAGCGTGTTTTCTACATCGCTCCAAACTCTTTGTCTTTTGAAAAAGAAAGGGCAGTTCTGGAACTTTTACCTGACCAAG
CGTCTTTTGCCATTACCATTACACGTTTTGCTCAAATGGCGCGCTATTTTGTCTTAAATGAACCTCAGACCAAAGAAACG
ATTGATGATAATGGCTTAGCCATGATTTTTTATCGTGCGCTGTCTCATTTTTCTGATACGGATTTGAAAGTTTTCGGACG
TCTAAAACAAGATACGAATTTTATCAAGCAATTGGTTGATTTGTATAAGGAATTAAAAACGGCTAACATGACCGTGCTTG
ATTTGAAAGAATTGCATTCAGCTGAGAAGCAAGAAGATTTGGTGAAAATCTTTTTGGCAGTTAATGATATTTTGTTAGCC
AATCAGTATGACAATCAGTCAAAAATTGCATTTTTTACTAAGCAGGTAGCATCGGGTCATTTGGATGATGCACTTGAAAA
TGTTGTTTTGGTTATCGATGGCTTTACTCGTTTTTCAGCAGAAGAGGAAGACTTAGTCAGCCTTTTAGAGGAAAAATGTG
CTCAAGTGATTATCGGAACTTACAGTAGTCAAAAGGCTTATAAGGCTACATTTTCAACTGGGAATGTCTATCAGGCAAGT
TTGGATTTTTTGCGTTCTTTGGCTGCTAAATTTCAAACACAGCCAGAGTATGTCGAGAGTTCTCAAAAATCTCAAGAAGC
ATTTGCTAAATTGTCAAAACTCTTTGAAGCGAAGCACGACTTTACAACATCAGACATCACTTTAACGCATGATGATAAGG
AACATTATGCCATCTGGGATGTTATTAATCAAAAAGAAGAAGTTGAGCATGTAGCAAAGGCTATTCGTCATAAGCTTCAC
CAAGGCTATCGTTATAAGGATATTTTGGTACTTTTGGGTGATGTGGATAGCTATCGTCTGCAAATCGGCAAAATTTTTGA
TAAATATGAAATTCCCTATTATTTTGGGAAGGCAGAGTCGATGAGTGACCATCCTTTGGTGCATTTTATTGATTCCTTGG
AGCGTGTGAAACGTTATCGTTTTCGTATGGAAGATGTTGTTAATCTTTTGAAAACAGGGCTATATGGTTCCTTCACTCAA
GATGATTTAGACCTTTTTGAGCAATATTTGATTTATGCGGATATCAAGGGACAAAGTAAATTTGCCAAGGAGTTCACGAT
TGCTTACAAGGGTGAAGAACACTTAGCTTATATTAATGGTATGCGCGAGCAAATTATGGCGCCTTTGCTAACTTTATTTA
AGGCACAAAAGCAGCTTGGCTCAAGTTTACTTGAAAAATTGATGACTTTCTTACGTGCGATTTCTCTACCTGAGAATTTA
GAGCGTACGGTAGCCACTTTCTCAGAAAATGAACAAGAAAAGCACGAGCAAGTTTGGCGAACATTTACTGGCATTCTCGA
GCAATTTCAAACGATTTTTGGACAAGAAAAATTGTCTTTGGATGAATTTTTAGCTCTTTTAAGAAGCGGTATGTTGGCTG
CCCAGTACCGCGTAGTGCCAGCAAGTGTTGATGTGGTTTCTGTAAAATCTTATGATTTGGTTGAGCCACATACCAATAAA
TTTGTCTTTGCACTTGGTATGACGCAGTCGCATTTCCCAAAAATTGCGCAAAATCGTAGCTTGATTTCAGATGAAGAACG
TGCCAAGGTCAATGAAACAACAGCTGACAATCAACGTTTTGATGTGATTAGTCGTGAAAATATTAAGAAAAATCATTTTG
CTGCCTTGTCACTGTTTAATTCAGCGACGGAAGAACTGGTGCTCAGTTTGCCACAAATTGCTAATGAGTCAGAAGATAAG
GAATCTTCTTATCTTGCGGAATTAGCTAGCTTTGGTGTGCCTGTTTTGGTTAAGGGACGAAATCGTTTGTCGACAGATGC
TGAAGACATTGGAAATTACAAAGCGTTCTTATCTCGTGTGATTGAGGTTAATCGCTTGGCTATTGAAGAAGACCGCGAGC
TTAGCAAAGAAGAGCAAACCTTCTGGTCAGTAGCTGTACGTTATCTTCGTAAAAAACTGGCTAACGAAGGTGTTGAATTG
CCACTGATTAAGGATAATATGCAGACCAAACCAGTTTCTGCCGAAGTGATTGAGACACATTTTCCAAGTGATGAGCCGAT
TAATTTGTCTTCTTCAGCTGTGACAACTTTCTACAACAATCAATACAAATATTTCTTACAGTATGTCCTTGGTTTGCAAG
AGGTTGAAACCATTCACCCTGACGCTAGAAATCACGGAACATACCTTCATCGTGTCTTTGAATTGGTTATGAAAGATGCT
TCGGATCAAGCCTTTGACGACAAATTAAATCGAGCTATTCAAACAACCAACGCTGAAGATGCTTTCAAATTTGTCTATGA
AGAAGACGAGGAAAGCCGCTACTCATTGACAGTCTTAGAAGATATTGCTAGAAGCACGGCGACAATTTTACGTCAGGATG
CTCAGATTCAGGTGGAAAATGAAGAAGAACCTTTTGAGTTAATGCTTGCAAATGCAGTACGTATTCGAGGTATTATTGAC
CGTGTGGACCGTTTGTCAGATGGAAGTCTTGGGGTGGTTGATTACAAATCAAGTCACAATACCTTTGATATTCAAAAATT
CTACAATGGTCTCAACCCACAATTAGTGACTTACATGCAAGCTCTTCGCGATAAAAAAATTAAAAGTGAGTCAGATAAGA
TTTTTGGAGCCATGTACCTTCACATGCAAGAGCCAAAAGTGGATTTGTCATCGGTAGCTACTACAGAGAAAATTTTGGAG
AATTTGTCTAAAGAGTTGCGTTACCGTGGCTTGTTCTTAGAAGATGAAAAAGGCTATTTATCAAATGGAAATTATCATCT
TAATGATTCTGTTTACACGCAAGAAGAATTAGATATTTTACTAGCTTACAATCAAAAATTATTTCTTCAAGCAGCTGAGC
AAATTAAACAAGGACACTTTTTGATTAATCCTTACAGTGAAGATGGTAAGACGGTTAAGGGTGACCAATTAAAAGCTATC
ACACGCTTTGAAGCGGACCGTCACATGCCATACGCACGTAAGTGGTTTAAATTACCAAGAAAAGATAGACGTCAAGGCTT
TTTGAGCCTGATGCAAGAAGAGGAGGAAAAAGATGACCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(749-1026)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.352

100

0.444