Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HT132_RS08390 Genome accession   NZ_CP054479
Coordinates   1632220..1632987 (+) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1627220..1637987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS08360 (HT132_08360) - 1627503..1629635 (+) 2133 WP_053284931.1 HD family phosphohydrolase -
  HT132_RS08365 (HT132_08365) ybeY 1629636..1630109 (+) 474 WP_053284930.1 rRNA maturation RNase YbeY -
  HT132_RS08370 (HT132_08370) - 1630090..1630464 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  HT132_RS08375 (HT132_08375) - 1630588..1630998 (+) 411 WP_003152976.1 cytidine deaminase -
  HT132_RS08380 (HT132_08380) era 1630979..1631884 (+) 906 WP_007408285.1 GTPase Era -
  HT132_RS08385 (HT132_08385) - 1632040..1632183 (+) 144 WP_007408286.1 YqzL family protein -
  HT132_RS08390 (HT132_08390) recO 1632220..1632987 (+) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  HT132_RS08395 (HT132_08395) glyQ 1633289..1634176 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  HT132_RS08400 (HT132_08400) glyS 1634169..1636208 (+) 2040 WP_029973407.1 glycine--tRNA ligase subunit beta -
  HT132_RS08405 (HT132_08405) ccpN 1636309..1636947 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  HT132_RS08410 (HT132_08410) - 1636973..1637785 (+) 813 WP_017418169.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=452772 HT132_RS08390 WP_007408287.1 1632220..1632987(+) (recO) [Bacillus amyloliquefaciens strain R8-25]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=452772 HT132_RS08390 WP_007408287.1 1632220..1632987(+) (recO) [Bacillus amyloliquefaciens strain R8-25]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATACTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89