Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   HT132_RS07475 Genome accession   NZ_CP054479
Coordinates   1463570..1464322 (+) Length   250 a.a.
NCBI ID   WP_017418284.1    Uniprot ID   A0AAP5QSZ3
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1458570..1469322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS07460 (HT132_07460) - 1458792..1458983 (-) 192 WP_003152639.1 hypothetical protein -
  HT132_RS07465 (HT132_07465) - 1459436..1462078 (+) 2643 WP_174532467.1 valine--tRNA ligase -
  HT132_RS07470 (HT132_07470) - 1462137..1463429 (+) 1293 WP_094296065.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  HT132_RS07475 (HT132_07475) comC 1463570..1464322 (+) 753 WP_017418284.1 A24 family peptidase Machinery gene
  HT132_RS07480 (HT132_07480) - 1464449..1465450 (+) 1002 WP_065180394.1 SPOR domain-containing protein -
  HT132_RS07485 (HT132_07485) - 1465591..1466160 (+) 570 WP_065180393.1 nucleoside triphosphate pyrophosphatase -
  HT132_RS07490 (HT132_07490) radC 1466192..1466887 (+) 696 WP_007408165.1 DNA repair protein RadC -
  HT132_RS07495 (HT132_07495) mreB 1466979..1467992 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  HT132_RS07500 (HT132_07500) mreC 1468023..1468886 (+) 864 WP_016938781.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27260.00 Da        Isoelectric Point: 9.4293

>NTDB_id=452765 HT132_RS07475 WP_017418284.1 1463570..1464322(+) (comC) [Bacillus amyloliquefaciens strain R8-25]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=452765 HT132_RS07475 WP_017418284.1 1463570..1464322(+) (comC) [Bacillus amyloliquefaciens strain R8-25]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCTGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.065

99.2

0.576