Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HT132_RS01030 Genome accession   NZ_CP054479
Coordinates   168154..169266 (-) Length   370 a.a.
NCBI ID   WP_053285270.1    Uniprot ID   A0A411A1C1
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 163154..174266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS01015 (HT132_01015) gyrA 163240..165702 (-) 2463 WP_021494587.1 DNA gyrase subunit A -
  HT132_RS01020 (HT132_01020) gyrB 165918..167834 (-) 1917 WP_014720600.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  HT132_RS01025 (HT132_01025) remB 167891..168136 (-) 246 WP_004392908.1 extracellular matrix regulator RemB -
  HT132_RS01030 (HT132_01030) recF 168154..169266 (-) 1113 WP_053285270.1 DNA replication/repair protein RecF Machinery gene
  HT132_RS01035 (HT132_01035) rlbA 169282..169497 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  HT132_RS01040 (HT132_01040) dnaN 169632..170768 (-) 1137 WP_014416704.1 DNA polymerase III subunit beta -
  HT132_RS01045 (HT132_01045) dnaA 170953..172293 (-) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  HT132_RS01050 (HT132_01050) rpmH 172915..173049 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  HT132_RS01055 (HT132_01055) rnpA 173203..173553 (+) 351 WP_004392944.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42429.38 Da        Isoelectric Point: 7.3309

>NTDB_id=452744 HT132_RS01030 WP_053285270.1 168154..169266(-) (recF) [Bacillus amyloliquefaciens strain R8-25]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKNLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=452744 HT132_RS01030 WP_053285270.1 168154..169266(-) (recF) [Bacillus amyloliquefaciens strain R8-25]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAAATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411A1C1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.054

100

0.941