Detailed information NTG0452719

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: I6H57_RS04060
• Genome accession: NZ_CP065991
• Coordinates: 870351..871772 (-)
• Length: 473 a.a.
• NCBI ID: WP_005696116.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain FDAARGOS_1000
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 865351..876772

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6H57_RS04030 (I6H57_04030)	-	865433..866881 (+)	1449	WP_005696111.1	hypothetical protein	-
I6H57_RS04035 (I6H57_04035)	-	866977..867306 (-)	330	WP_005696112.1	TusE/DsrC/DsvC family sulfur relay protein	-
I6H57_RS04040 (I6H57_04040)	ttcA	867308..868237 (-)	930	WP_005696113.1	tRNA 2-thiocytidine(32) synthetase TtcA	-
I6H57_RS04050 (I6H57_04050)	ftnA	868576..869076 (-)	501	WP_005696114.1	non-heme ferritin	-
I6H57_RS04055 (I6H57_04055)	ftnA	869096..869581 (-)	486	WP_005696115.1	non-heme ferritin	-
I6H57_RS04060 (I6H57_04060)	sbcB	870351..871772 (-)	1422	WP_005696116.1	exodeoxyribonuclease I	Machinery gene
I6H57_RS04065 (I6H57_04065)	-	871775..872647 (-)	873	WP_005696118.1	DMT family transporter	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54410.75 Da
• Isoelectric Point: 5.1942

>NTDB_id=452719 I6H57_RS04060 WP_005696116.1 870351..871772(-) (sbcB) [Haemophilus parainfluenzae strain FDAARGOS_1000]
MANDFSFFIYDYESFGINPASDRPAQFAGIRTDANFNIIGEPVMLYCKQTNDYLPAPEAVMVTGITPQECNEKGIPEPEF
AAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSF
RLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLLDTAEMTPLVHVSGMLGNYRGNCA
WVAPLAWHPTNQNAVIVCDLSGDIDNLLSKSAVDLRQDLYTKKSELEERGVSSVPLKLVHINKCPILAPAKTLLPENAAR
LGIDRQHCLDNLAKLRQSLDIREKVIEIFSEEREFEPSDNVETELYNGFFSSADKNNMAILRDLPAEKLAGHGLAFEDKR
IPELLFHYRARHFYKTLNRAEQIKWQKYRQRKLEQSAVKFEESLQQLAEEYSDNPTKLNLLQQVYEYGAKLLS

Nucleotide

• Length: 1422 bp

>NTDB_id=452719 I6H57_RS04060 WP_005696116.1 870351..871772(-) (sbcB) [Haemophilus parainfluenzae strain FDAARGOS_1000]
ATGGCAAACGATTTTAGTTTTTTTATCTACGATTACGAAAGTTTTGGTATCAATCCGGCAAGTGATCGTCCTGCTCAATT
TGCTGGTATTCGTACCGATGCAAATTTTAATATTATTGGCGAGCCTGTTATGTTGTATTGCAAGCAAACCAATGATTATT
TGCCTGCCCCGGAAGCCGTAATGGTCACAGGAATTACACCACAAGAATGTAATGAAAAGGGAATTCCTGAACCTGAATTC
GCCGCAAAAATTCTAGCTGAATTTTCACAACCCAATACTTGTGTGATGGGTTACAACAACATTCGTTATGACGATGAAAT
GACTCGTTATACCTTTTACCGTAACTTCATCGATCCCTATGAATATAGCTGGAAAAATGGCAATTCTCGGTGGGATTTAC
TGGATTTAGTACGCGCCTGTTATGCTTTGCGTCCTGAGGGTATTAATTGGGCTTATGACGATGATGGCATGCCAAGCTTT
CGCTTAGAAAAGCTAACCAAAGCAAATGGCATTGAGCATGAAAATGCTCATGATGCCATGGCGGATGTGTATGCAACTAT
CGCTATGGCTAAATTAATCAAAGAAAAGCAGCCTAAATTATTTCAATTCTTCTTTGAGCATAGAGGCAAAAAGGAAATTG
AGAAACTGCTCGACACCGCTGAAATGACACCATTAGTGCACGTTTCGGGCATGCTAGGGAATTATCGCGGTAATTGTGCT
TGGGTAGCACCATTAGCATGGCATCCAACTAATCAAAATGCCGTAATCGTCTGTGATTTATCAGGTGATATTGATAATTT
ACTCAGTAAAAGTGCGGTTGATTTGCGACAAGATTTATATACCAAGAAAAGCGAGCTAGAAGAAAGGGGAGTTTCATCAG
TTCCATTAAAATTGGTTCATATAAATAAATGCCCAATTTTGGCGCCTGCAAAAACTTTACTGCCAGAAAATGCGGCTCGT
TTAGGGATAGATAGACAACATTGCTTAGATAATTTAGCAAAATTGCGCCAATCCTTAGATATTCGCGAGAAAGTTATTGA
AATCTTCTCAGAAGAGCGTGAATTTGAGCCGAGTGATAATGTAGAAACTGAGCTTTATAACGGCTTCTTTAGCAGTGCCG
ATAAAAATAATATGGCTATTTTACGGGATTTACCAGCTGAGAAATTAGCTGGACATGGTTTAGCATTTGAAGATAAACGG
ATTCCTGAATTGTTGTTCCATTATCGTGCAAGACATTTCTACAAAACCCTAAATCGTGCTGAGCAAATAAAATGGCAAAA
ATATCGCCAACGTAAATTAGAACAAAGTGCGGTTAAATTTGAAGAAAGCTTACAGCAGTTAGCAGAGGAATATTCTGATA
ATCCAACCAAACTGAATTTACTGCAACAGGTTTATGAATACGGAGCAAAACTGTTATCTTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (208-469)

• Exonuclease (RNase_T) (9-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	55.365	98.52	0.545