Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   I6H57_RS02870 Genome accession   NZ_CP065991
Coordinates   607890..609269 (+) Length   459 a.a.
NCBI ID   WP_005695826.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain FDAARGOS_1000     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 602890..614269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H57_RS02850 (I6H57_02850) - 604041..604649 (-) 609 WP_032822734.1 TIGR04211 family SH3 domain-containing protein -
  I6H57_RS02855 (I6H57_02855) - 604724..605986 (-) 1263 WP_005695822.1 inorganic phosphate transporter -
  I6H57_RS02860 (I6H57_02860) - 606022..606702 (-) 681 WP_005695824.1 TIGR00153 family protein -
  I6H57_RS02865 (I6H57_02865) - 606841..607863 (+) 1023 WP_005695825.1 inorganic triphosphatase -
  I6H57_RS02870 (I6H57_02870) radA/sms 607890..609269 (+) 1380 WP_005695826.1 DNA repair protein RadA Machinery gene
  I6H57_RS02875 (I6H57_02875) lrp 609352..609831 (+) 480 WP_005695827.1 leucine-responsive transcriptional regulator Lrp -
  I6H57_RS02880 (I6H57_02880) - 609834..612623 (+) 2790 WP_005695828.1 DNA translocase FtsK -
  I6H57_RS02885 (I6H57_02885) lolA 612660..613286 (+) 627 WP_005695829.1 outer membrane lipoprotein chaperone LolA -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49647.17 Da        Isoelectric Point: 8.1129

>NTDB_id=452715 I6H57_RS02870 WP_005695826.1 607890..609269(+) (radA/sms) [Haemophilus parainfluenzae strain FDAARGOS_1000]
MAKAPKTAYVCNDCGAEFSRWQGQCSACKAWNTISEVRLISASNSTKNDRFSGYAGETRAKIQTLSEISLQETPRFTSGF
KELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAKNMTALYVTGEESLQQVAMRANRLNLPTDKLNMLSETSVEQ
ICNLADQLKPQIIVVDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDCSL
LLEGEADSRFRTLRSHKNRFGAVNELGVFGMTEQGLREVKNPSAIFLSRGDEQTPGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLEQNRLALLLAVLHRHGGLQMSDQDVFVNVVSGVKVGETGADLALLLALISSFRNRPLPQDLVVFGEVG
LAGEIRPVTSGQERISEAAKHGFKRAIVPFANKPKSAVENMEVFTVKKLSDALAILDNF

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=452715 I6H57_RS02870 WP_005695826.1 607890..609269(+) (radA/sms) [Haemophilus parainfluenzae strain FDAARGOS_1000]
ATGGCAAAAGCTCCTAAAACCGCTTATGTATGTAATGATTGTGGCGCGGAATTTTCGCGCTGGCAAGGCCAATGTTCTGC
CTGTAAAGCGTGGAATACGATTAGTGAAGTGCGGTTAATTTCAGCCTCAAATTCCACAAAAAATGATCGTTTTAGTGGTT
ATGCAGGAGAAACTCGCGCAAAAATCCAAACGCTTTCTGAAATTAGTTTACAAGAAACACCGCGTTTCACCAGTGGATTT
AAAGAATTAGATCGCGTATTAGGCGGCGGGATCGTACCAGGAAGTGCCATTTTAATTGGTGGGCATCCTGGTGCAGGTAA
AAGTACCTTGTTACTTCAAGTGATGTGCGGATTAGCAAAAAATATGACCGCACTTTATGTGACGGGGGAAGAGTCACTTC
AACAAGTGGCGATGCGAGCTAATCGCTTAAATCTACCAACAGATAAATTAAATATGTTATCTGAAACCTCTGTCGAGCAA
ATTTGTAATCTAGCGGATCAGCTGAAACCTCAAATTATCGTAGTAGACTCGATCCAGGTTATGCATCTTTCGGATATTCA
ATCTTCTCCAGGAAGTGTGGCACAAGTGCGTGAATGTGCCTCTTTCCTGACTCGTTATGCGAAAACTCGACAGGTCGCTA
TCATTATGGTAGGACACGTCACGAAAGATGGCACTCTTGCCGGTCCGAAAGTATTGGAACATGCCATTGACTGTTCGTTA
TTACTGGAAGGGGAGGCAGATTCCCGTTTCCGTACGCTACGTAGCCATAAAAACCGGTTTGGTGCGGTGAATGAGCTAGG
GGTATTTGGTATGACAGAACAAGGCTTACGTGAGGTGAAAAATCCATCAGCAATTTTCTTAAGTCGAGGCGATGAACAAA
CACCGGGTAGTTCCGTGATGGTACTGTGGGAAGGTACGCGTCCGCTTTTAGTTGAAATTCAAGCGTTGGTGGATCATTCC
ATGCTTGCAAATCCGCGCCGTGTGGCAGTAGGGCTAGAGCAAAATCGTTTAGCTTTATTGCTTGCGGTATTACATCGTCA
TGGAGGACTACAAATGTCGGATCAAGATGTTTTTGTGAATGTCGTTAGCGGTGTAAAAGTCGGGGAAACTGGAGCAGATC
TTGCATTATTACTTGCATTAATTTCGAGTTTCCGTAATCGACCATTACCACAAGATTTAGTTGTCTTTGGTGAAGTAGGT
TTAGCAGGTGAAATTCGCCCGGTGACCAGTGGTCAAGAACGCATTAGTGAAGCAGCAAAACATGGATTTAAACGGGCGAT
TGTGCCTTTCGCCAATAAGCCGAAAAGTGCGGTCGAAAATATGGAAGTTTTTACAGTGAAAAAGCTCTCTGATGCACTTG
CTATTTTGGATAATTTCTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(81-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.739

100

0.468
  radA Streptococcus mitis NCTC 12261

44.419

93.682

0.416
  radA Streptococcus pneumoniae Rx1

44.419

93.682

0.416
  radA Streptococcus pneumoniae D39

44.419

93.682

0.416
  radA Streptococcus pneumoniae R6

44.419

93.682

0.416
  radA Streptococcus pneumoniae TIGR4

44.419

93.682

0.416
  radA Streptococcus mitis SK321

44.419

93.682

0.416