Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HUB32_RS19230 Genome accession   NZ_CP054468
Coordinates   4259932..4261308 (+) Length   458 a.a.
NCBI ID   WP_013698533.1    Uniprot ID   A0AB38TL25
Organism   Burkholderia gladioli strain CGB10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4254932..4266308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUB32_RS19210 - 4255387..4256340 (+) 954 WP_124094321.1 DUF1853 family protein -
  HUB32_RS19215 thiD 4256419..4257231 (-) 813 WP_036050843.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HUB32_RS19220 lplT 4257332..4258639 (-) 1308 WP_013698535.1 lysophospholipid transporter LplT -
  HUB32_RS19225 alr 4258851..4259921 (+) 1071 WP_013698534.1 alanine racemase -
  HUB32_RS19230 radA 4259932..4261308 (+) 1377 WP_013698533.1 DNA repair protein RadA Machinery gene
  HUB32_RS19235 - 4261440..4261703 (+) 264 WP_013698532.1 DUF2866 domain-containing protein -
  HUB32_RS19240 - 4261843..4263768 (-) 1926 WP_186288532.1 ATP-binding cassette domain-containing protein -
  HUB32_RS19245 - 4263958..4264443 (+) 486 WP_025099321.1 glutathione peroxidase -
  HUB32_RS19250 cls 4264475..4265914 (-) 1440 WP_036050854.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48728.15 Da        Isoelectric Point: 7.2038

>NTDB_id=452669 HUB32_RS19230 WP_013698533.1 4259932..4261308(+) (radA) [Burkholderia gladioli strain CGB10]
MAKQKTVYICTECGGQSLKWQGQCPSCHAWNTLVESAAETPSQHRFQALAKSAPVQRLADIDAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAQLASQRRALYISGEESAAQIALRAQRLALLDHGGDAADLKLLAEIQLEKIQ
ATIAAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGALAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTERGLRGVSNPSALFLSQHEEVVPGSCVLVTQEGSRPLLVEVQALVDTANV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTIALIPKANAPKQPIEGLTVMAVERIEQAIDRVRGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=452669 HUB32_RS19230 WP_013698533.1 4259932..4261308(+) (radA) [Burkholderia gladioli strain CGB10]
GTGGCGAAACAGAAAACGGTCTATATCTGCACCGAATGCGGCGGCCAGTCGCTGAAATGGCAGGGCCAGTGCCCGTCCTG
CCATGCCTGGAACACGCTGGTCGAATCGGCCGCCGAAACCCCTTCGCAGCACCGCTTCCAGGCGCTCGCCAAGAGCGCGC
CGGTGCAGCGCCTGGCCGATATCGACGCGGCCGACGTGCCGCGCTTTTCCACCGGCATCGGCGAGTTCGACCGCGTGCTC
GGCGGCGGCCTGGTGGCCGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGTAAATCCACCCTGTTGCTGCAGTC
GCTGGCCCAGCTGGCCAGCCAGCGCCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCCCTGCGCGCCC
AGCGCCTGGCCCTGCTCGATCACGGCGGCGACGCCGCCGATCTCAAGCTGCTGGCGGAAATCCAGCTCGAGAAGATCCAG
GCCACGATCGCCGCCGAGCGGCCCGACGTGGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAAGCGCTCACCTCGGC
GCCCGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCAGCTCACGCGCATCGCCAAGCAGTCGGGCACCGCGATCATCA
TGGTTGGCCACGTCACCAAGGAGGGGGCGCTGGCGGGCCCGCGCGTGCTGGAGCACATCGTCGACACGGTGCTGTACTTC
GAGGGCGACACGCATTCTTCCTACCGGCTGGTGCGGGCCTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTCGGCGTGTT
CGCCATGACCGAGCGCGGCCTGCGCGGCGTGTCCAACCCGTCCGCGCTGTTCCTCTCGCAGCACGAGGAGGTGGTGCCGG
GTTCCTGCGTGCTGGTCACGCAGGAGGGCTCGCGGCCGCTGCTGGTGGAGGTGCAGGCGCTGGTCGACACCGCCAACGTG
CCGAATCCGCGGCGCCTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCCATGCTGCTGGCCGTGCTGCACCGCCATGCGGG
CATCGCCTGCTTCGACCAGGACGTGTTCCTGAACGCGGTGGGGGGCGTCAAGATTACCGAGCCGGCCGCCGACCTGGCGG
TGCTGCTGGCGATCCATTCGTCGATGCGTAACAAAGCGTTGCCGAAGGGCTTGATCGTGTTCGGCGAGGTCGGGCTGGCC
GGCGAGATCCGGCCTTCGCCGCGCGGCCAGGAGCGTCTGCGCGAGGCGGCCAAGCTGGGTTTCACGATCGCGCTGATTCC
CAAGGCCAATGCGCCCAAGCAGCCGATCGAGGGCCTCACCGTGATGGCCGTCGAGCGCATCGAGCAGGCCATCGACCGCG
TGCGCGGCCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.707

100

0.493
  radA Streptococcus pneumoniae Rx1

46.32

100

0.467
  radA Streptococcus pneumoniae D39

46.32

100

0.467
  radA Streptococcus pneumoniae R6

46.32

100

0.467
  radA Streptococcus pneumoniae TIGR4

46.32

100

0.467
  radA Streptococcus mitis SK321

46.507

100

0.465
  radA Streptococcus mitis NCTC 12261

46.171

99.782

0.461