Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   HSX12_RS13225 Genome accession   NZ_CP054467
Coordinates   2691989..2692741 (-) Length   250 a.a.
NCBI ID   WP_156240439.1    Uniprot ID   -
Organism   Bacillus velezensis strain CF57     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2686989..2697741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSX12_RS13200 (HSX12_13100) mreC 2687425..2688288 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  HSX12_RS13205 (HSX12_13105) mreB 2688319..2689332 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  HSX12_RS13210 (HSX12_13110) radC 2689424..2690119 (-) 696 WP_007408165.1 RadC family protein -
  HSX12_RS13215 (HSX12_13115) - 2690151..2690720 (-) 570 WP_015417926.1 Maf family protein -
  HSX12_RS13220 (HSX12_13120) - 2690861..2691862 (-) 1002 WP_015417927.1 SPOR domain-containing protein -
  HSX12_RS13225 (HSX12_13125) comC 2691989..2692741 (-) 753 WP_156240439.1 prepilin peptidase Machinery gene
  HSX12_RS13230 (HSX12_13130) - 2692881..2694173 (-) 1293 WP_156240440.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  HSX12_RS13235 (HSX12_13135) - 2694232..2696874 (-) 2643 WP_015417930.1 valine--tRNA ligase -
  HSX12_RS13240 (HSX12_13140) - 2697327..2697518 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27162.88 Da        Isoelectric Point: 9.2521

>NTDB_id=452636 HSX12_RS13225 WP_156240439.1 2691989..2692741(-) (comC) [Bacillus velezensis strain CF57]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPIVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISVGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=452636 HSX12_RS13225 WP_156240439.1 2691989..2692741(-) (comC) [Bacillus velezensis strain CF57]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCATCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTCTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGTCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58