Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   HSX12_RS05295 Genome accession   NZ_CP054467
Coordinates   1020367..1020945 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain CF57     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1015367..1025945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSX12_RS19865 - 1015868..1016383 (-) 516 WP_370529535.1 methyl-accepting chemotaxis protein -
  HSX12_RS19870 - 1016675..1017049 (-) 375 Protein_969 protoglobin domain-containing protein -
  HSX12_RS05280 (HSX12_05210) - 1017282..1018805 (-) 1524 WP_156240306.1 FAD-dependent oxidoreductase -
  HSX12_RS05285 (HSX12_05215) - 1018930..1019787 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  HSX12_RS05290 (HSX12_05220) - 1019818..1020051 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  HSX12_RS05295 (HSX12_05225) comK 1020367..1020945 (+) 579 WP_003155179.1 competence protein ComK Regulator
  HSX12_RS05300 (HSX12_05230) - 1021090..1021458 (+) 369 WP_012117235.1 iron chaperone -
  HSX12_RS05305 (HSX12_05235) - 1021485..1021856 (+) 372 WP_040238319.1 iron chaperone -
  HSX12_RS05310 (HSX12_05240) - 1021979..1022488 (+) 510 WP_015417169.1 MepB family protein -
  HSX12_RS05315 (HSX12_05245) - 1022717..1023427 (-) 711 WP_033574494.1 YrpD family protein -
  HSX12_RS05320 (HSX12_05250) - 1023623..1023892 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  HSX12_RS05325 (HSX12_05255) - 1023925..1024242 (-) 318 WP_003155166.1 YbjQ family protein -
  HSX12_RS05330 (HSX12_05260) - 1024284..1025753 (-) 1470 WP_156240307.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=452600 HSX12_RS05295 WP_003155179.1 1020367..1020945(+) (comK) [Bacillus velezensis strain CF57]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=452600 HSX12_RS05295 WP_003155179.1 1020367..1020945(+) (comK) [Bacillus velezensis strain CF57]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823