Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6I15_RS14135 Genome accession   NZ_CP065970
Coordinates   2860420..2861847 (-) Length   475 a.a.
NCBI ID   WP_000980568.1    Uniprot ID   B7L9N7
Organism   Escherichia coli strain FDAARGOS_1058     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2855420..2866847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I15_RS14105 (I6I15_14105) yeeZ 2855475..2856299 (+) 825 WP_000754756.1 SDR family oxidoreductase -
  I6I15_RS14110 (I6I15_14110) yeeY 2856345..2857274 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  I6I15_RS14115 (I6I15_14115) yoeI 2857489..2857551 (+) 63 WP_010723108.1 membrane protein YoeI -
  I6I15_RS14120 (I6I15_14120) plaP 2857541..2858899 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6I15_RS14125 (I6I15_14125) tsuA 2859078..2860136 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  I6I15_RS14130 (I6I15_14130) tsuB 2860150..2860377 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I6I15_RS14135 (I6I15_14135) sbcB 2860420..2861847 (-) 1428 WP_000980568.1 exodeoxyribonuclease I Machinery gene
  I6I15_RS14140 (I6I15_14140) dacD 2862056..2863222 (+) 1167 WP_000830163.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6I15_RS14145 (I6I15_14145) sbmC 2863341..2863814 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  I6I15_RS14150 (I6I15_14150) yeeA 2864012..2865070 (+) 1059 WP_001200905.1 FUSC family protein -
  I6I15_RS14155 (I6I15_14155) tmaR 2865242..2865571 (+) 330 WP_000450409.1 DUF496 family protein -
  I6I15_RS14160 (I6I15_14160) - 2865672..2865854 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  I6I15_RS14165 (I6I15_14165) - 2865926..2866054 (+) 129 Protein_2666 transposase domain-containing protein -
  I6I15_RS14170 (I6I15_14170) - 2866343..2866423 (-) 81 Protein_2667 hypothetical protein -
  I6I15_RS14175 (I6I15_14175) yeeW 2866469..2866663 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.76 Da        Isoelectric Point: 5.4700

>NTDB_id=452575 I6I15_RS14135 WP_000980568.1 2860420..2861847(-) (sbcB) [Escherichia coli strain FDAARGOS_1058]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=452575 I6I15_RS14135 WP_000980568.1 2860420..2861847(-) (sbcB) [Escherichia coli strain FDAARGOS_1058]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7L9N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583