Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HSZ52_RS11380 Genome accession   NZ_CP054440
Coordinates   2307942..2309318 (-) Length   458 a.a.
NCBI ID   WP_011303850.1    Uniprot ID   Q49V35
Organism   Staphylococcus saprophyticus strain UTI-058y     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2302942..2314318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ52_RS11365 (HSZ52_11365) cysE 2303968..2304609 (-) 642 WP_061050675.1 serine O-acetyltransferase -
  HSZ52_RS11370 (HSZ52_11370) gltX 2304956..2306410 (-) 1455 WP_002484175.1 glutamate--tRNA ligase -
  HSZ52_RS11375 (HSZ52_11375) - 2306828..2307886 (-) 1059 WP_037539107.1 PIN/TRAM domain-containing protein -
  HSZ52_RS11380 (HSZ52_11380) radA 2307942..2309318 (-) 1377 WP_011303850.1 DNA repair protein RadA Machinery gene
  HSZ52_RS11385 (HSZ52_11385) - 2309666..2312128 (-) 2463 WP_011303851.1 ATP-dependent Clp protease ATP-binding subunit -
  HSZ52_RS11390 (HSZ52_11390) - 2312140..2313150 (-) 1011 WP_061050380.1 protein arginine kinase -
  HSZ52_RS11395 (HSZ52_11395) - 2313143..2313694 (-) 552 WP_011303853.1 UvrB/UvrC motif-containing protein -
  HSZ52_RS11400 (HSZ52_11400) - 2313711..2314172 (-) 462 WP_002484181.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50593.26 Da        Isoelectric Point: 8.0081

>NTDB_id=452546 HSZ52_RS11380 WP_011303850.1 2307942..2309318(-) (radA) [Staphylococcus saprophyticus strain UTI-058y]
MAKKKVIFECMACGYQSPKWMGKCPNCGGWNQMEEIVEQKAASPKHGVRSRDNVSKVQKLNEIKHETTPRVKTNSNEFNR
VLGGGIVNGSLVLIGGDPGIGKSTLLLQICASLSQSKNVLYITGEESLSQTKLRAERLDEDSSELNVFAETDLEVIHETV
KQIKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQTGLKGVKNPSEMFLEERSANVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIIIATASSFKDLTVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAEKLGFKRVIIPESNIGGWQFPEGIKVIGVKSVHEALKYALTKHKK

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=452546 HSZ52_RS11380 WP_011303850.1 2307942..2309318(-) (radA) [Staphylococcus saprophyticus strain UTI-058y]
TTGGCTAAAAAGAAAGTGATTTTTGAATGTATGGCATGTGGTTATCAGTCACCGAAATGGATGGGGAAATGCCCAAACTG
TGGTGGTTGGAATCAAATGGAAGAAATTGTCGAACAAAAGGCAGCCAGTCCAAAACATGGCGTACGCAGTCGAGACAATG
TATCTAAAGTACAAAAATTAAATGAAATTAAACATGAAACAACACCTAGGGTTAAAACAAATTCAAACGAATTTAACCGC
GTACTAGGTGGAGGTATTGTTAATGGTTCACTTGTCTTAATTGGTGGTGATCCTGGTATTGGGAAATCGACATTACTATT
ACAAATTTGTGCATCATTATCCCAATCTAAAAACGTATTATATATCACTGGTGAAGAATCATTGAGTCAAACGAAATTAA
GAGCGGAAAGATTAGATGAGGATTCTAGTGAATTAAATGTATTTGCCGAAACAGATTTAGAAGTAATCCATGAAACGGTT
AAACAAATTAAACCAGATTTACTTGTTGTGGATTCTATACAAACAATATTCCACCCTGAAATCAGCTCGGCACCAGGCTC
GGTTTCACAAGTTAGAGAAAGTACGCAGAGCTTAATGAATATAGCTAAACAGATGAATATTGCGACGTTTATTGTCGGAC
ATGTAACAAAAGAAGGTCAAATCGCTGGGCCGCGTTTACTTGAACATATGGTGGACACAGTGCTTTACTTCGAAGGTGAT
GAACACCACGCATATCGTATTTTAAGAGCTGTGAAAAACCGTTTTGGTTCTACAAATGAAATGGGTATCTTTGAGATGAA
GCAAACAGGTTTGAAAGGCGTTAAAAACCCTTCGGAAATGTTTCTTGAAGAACGTTCAGCCAATGTACCAGGTTCCACGA
TTGTTTCTACCATGGAAGGTACGAGACCTTTATTGATTGAAGTACAAGCATTAGTGACACCGACAACTTTTAATAATCCG
AGACGTATGGCAACGGGCATAGATCATAATCGATTGAGTTTGCTCATGGCCGTATTAGAAAAGAAAGAAAATTATCTCCT
TCAGCAGCAAGATGCTTATATCAAAGTTGCGGGTGGTGTGAGACTTACTGAGCCAGCAGTAGATTTAGGTATCATTATTG
CGACAGCTTCAAGCTTTAAAGATTTAACGGTGGACGGCTTGGACTGTTTCATCGGTGAGGTAGGTCTTACTGGAGAAGTC
AGACGTGTTTCTCGAATAGAACAACGTGTCCAAGAAGCTGAAAAATTAGGGTTCAAACGTGTGATTATCCCTGAGTCCAA
TATTGGGGGATGGCAATTTCCTGAAGGTATAAAAGTAATTGGGGTTAAAAGTGTTCATGAAGCTTTAAAATACGCATTAA
CAAAACATAAAAAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

AAA domain (AAA_25)

(67-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q49V35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

99.563

0.655
  radA Streptococcus pneumoniae Rx1

60

98.253

0.59
  radA Streptococcus pneumoniae D39

60

98.253

0.59
  radA Streptococcus pneumoniae R6

60

98.253

0.59
  radA Streptococcus pneumoniae TIGR4

60

98.253

0.59
  radA Streptococcus mitis NCTC 12261

60

98.253

0.59
  radA Streptococcus mitis SK321

60

98.253

0.59