Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   HSZ52_RS04715 Genome accession   NZ_CP054440
Coordinates   966259..966888 (+) Length   209 a.a.
NCBI ID   WP_047504957.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-058y     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 961259..971888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ52_RS13355 - 961941..962030 (+) 90 WP_373996334.1 IS3 family transposase -
  HSZ52_RS04690 (HSZ52_04690) - 962108..963094 (-) 987 WP_002482841.1 aromatic acid exporter family protein -
  HSZ52_RS04695 (HSZ52_04695) map 963269..964021 (+) 753 WP_011302778.1 type I methionyl aminopeptidase -
  HSZ52_RS04700 (HSZ52_04700) - 964125..964511 (+) 387 WP_047504955.1 hypothetical protein -
  HSZ52_RS04705 (HSZ52_04705) liaF 964528..965229 (+) 702 WP_011302780.1 cell wall-active antibiotics response protein LiaF -
  HSZ52_RS04710 (HSZ52_04710) vraS 965226..966269 (+) 1044 WP_011302781.1 sensor histidine kinase Regulator
  HSZ52_RS04715 (HSZ52_04715) vraR 966259..966888 (+) 630 WP_047504957.1 response regulator transcription factor Regulator
  HSZ52_RS04720 (HSZ52_04720) - 967045..968217 (-) 1173 WP_047504960.1 YihY/virulence factor BrkB family protein -
  HSZ52_RS04725 (HSZ52_04725) - 968628..968912 (-) 285 WP_002482848.1 hypothetical protein -
  HSZ52_RS04730 (HSZ52_04730) - 968919..969383 (-) 465 WP_011302783.1 low molecular weight protein-tyrosine-phosphatase -
  HSZ52_RS04735 (HSZ52_04735) - 969518..969721 (+) 204 WP_002482850.1 DUF1128 family protein -
  HSZ52_RS04740 (HSZ52_04740) - 969735..970973 (+) 1239 WP_011302784.1 aminopeptidase -
  HSZ52_RS04745 (HSZ52_04745) - 971187..971708 (+) 522 WP_011302785.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23698.21 Da        Isoelectric Point: 4.6997

>NTDB_id=452524 HSZ52_RS04715 WP_047504957.1 966259..966888(+) (vraR) [Staphylococcus saprophyticus strain UTI-058y]
MPIKVLFVDDHEMVRIGISSYLSTQSDIDVIGEGKSGKDAIEKAHELKPDLILMDLLMDDMDGVEATEQVKKDLPNIKVV
MLTSYIEDNEVYRALDSGVDSYILKTTSASDIAEAIRKTYNNESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=452524 HSZ52_RS04715 WP_047504957.1 966259..966888(+) (vraR) [Staphylococcus saprophyticus strain UTI-058y]
ATGCCGATTAAAGTATTATTTGTTGATGATCATGAAATGGTTCGAATAGGTATTTCTAGTTATTTATCCACACAATCAGA
TATAGATGTCATAGGGGAAGGTAAGTCAGGAAAAGATGCAATCGAAAAAGCACATGAACTGAAACCGGACCTAATTTTAA
TGGATTTACTTATGGACGATATGGATGGTGTCGAAGCAACTGAACAAGTTAAAAAAGACTTGCCAAATATTAAAGTTGTC
ATGCTTACGAGTTATATTGAAGATAACGAAGTCTATCGTGCACTTGATTCCGGTGTAGATAGCTATATATTGAAAACAAC
AAGTGCTAGTGATATTGCTGAAGCGATTCGTAAGACTTACAATAATGAGTCAGTATTTGAAGCAGAAGTCCTAGTTAAAA
TGAGAAATAGGATGAAACAACGAGCTGAATTGTATGAAATGCTCACAGAACGTGAAATGGAGATTTTATTACTGATTGCT
AAAGGTTACTCTAACCAAGAGATTGCCAGCGCTTCACATATTACGATTAAAACAGTGAAAACGCATGTAAGTAATATCCT
AAGTAAATTAGAAGTTCAAGATAGAACTCAAGCCGTCATATATGCATTCCAGCACAATTTAATTCAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

89.474

100

0.895