Detailed information NTG0452496

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6H98_RS23645
• Genome accession: NZ_CP065966
• Coordinates: 5013472..5014476 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain FDAARGOS_1041
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5008472..5019476

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6H98_RS23615 (I6H98_23615)	fghA	5008564..5009415 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
I6H98_RS23620 (I6H98_23620)	ispF	5009486..5009959 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6H98_RS23625 (I6H98_23625)	truD	5009956..5011023 (+)	1068	WP_016852567.1	tRNA pseudouridine(13) synthase TruD	-
I6H98_RS23630 (I6H98_23630)	surE	5011011..5011760 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
I6H98_RS23635 (I6H98_23635)	-	5011793..5012428 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
I6H98_RS23640 (I6H98_23640)	-	5012474..5013367 (+)	894	WP_016852568.1	peptidoglycan DD-metalloendopeptidase family protein	-
I6H98_RS23645 (I6H98_23645)	rpoS	5013472..5014476 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
I6H98_RS23650 (I6H98_23650)	fdxA	5014903..5015226 (-)	324	WP_003119354.1	ferredoxin FdxA	-
I6H98_RS23655 (I6H98_23655)	mutS	5015293..5017860 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
I6H98_RS23660 (I6H98_23660)	-	5017986..5018993 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=452496 I6H98_RS23645 WP_003113871.1 5013472..5014476(+) (rpoS) [Pseudomonas aeruginosa strain FDAARGOS_1041]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=452496 I6H98_RS23645 WP_003113871.1 5013472..5014476(+) (rpoS) [Pseudomonas aeruginosa strain FDAARGOS_1041]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653