Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   HSZ49_RS04675 Genome accession   NZ_CP054438
Coordinates   978615..979331 (-) Length   238 a.a.
NCBI ID   WP_002482781.1    Uniprot ID   A0A380HJP0
Organism   Staphylococcus saprophyticus strain UTI-042y     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 973615..984331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ49_RS04655 (HSZ49_04655) - 974680..974880 (+) 201 WP_174543858.1 sulfurtransferase TusA family protein -
  HSZ49_RS04660 (HSZ49_04660) - 975050..976003 (+) 954 WP_002482778.1 LacI family DNA-binding transcriptional regulator -
  HSZ49_RS04665 (HSZ49_04665) - 976089..977573 (+) 1485 WP_002482779.1 sucrose-6-phosphate hydrolase -
  HSZ49_RS04670 (HSZ49_04670) - 977570..978538 (+) 969 WP_048787269.1 carbohydrate kinase -
  HSZ49_RS04675 (HSZ49_04675) agrA 978615..979331 (-) 717 WP_002482781.1 quorum-sensing response regulator AgrA Regulator
  HSZ49_RS04680 (HSZ49_04680) agrC 979344..980639 (-) 1296 WP_041079873.1 quorum-sensing sensor histidine kinase AgrC -
  HSZ49_RS04685 (HSZ49_04685) agrD 980665..980826 (-) 162 WP_002482783.1 cyclic lactone autoinducer peptide AgrD -
  HSZ49_RS04690 (HSZ49_04690) - 980829..981398 (-) 570 WP_041079872.1 accessory gene regulator AgrB -
  HSZ49_RS04695 (HSZ49_04695) - 982158..982943 (-) 786 WP_011302730.1 carbon-nitrogen family hydrolase -
  HSZ49_RS04700 (HSZ49_04700) - 983113..983742 (-) 630 WP_069821659.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27954.74 Da        Isoelectric Point: 5.0875

>NTDB_id=452488 HSZ49_RS04675 WP_002482781.1 978615..979331(-) (agrA) [Staphylococcus saprophyticus strain UTI-042y]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDILERSKNLNDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELDQLDERFFRCHNSFVVNRHNIDSIDSKSRVVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=452488 HSZ49_RS04675 WP_002482781.1 978615..979331(-) (agrA) [Staphylococcus saprophyticus strain UTI-042y]
ATGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAGCACATGGTTTCTATTATTAATAACTACATCATGATTGA
AGAAAAGCCAATGGAAATCGAAGTTGCCACTGCTGATCCTTATGACATCTTAGAACGCTCTAAGAACCTCAATGATATTG
GGTGTTATTTTTTAGATATTCAGCTTGAAGCTGATATTAATGGTATCAAACTTGCTAGTGAGATTCGTAAACATGATCCT
GTAGGTAATATCATCTTTGTTACAAGTCACAGTGAGTTAACTTACCTAACATTTGTCTATAAGGTAGCCGCGATGGATTT
CATTTTTAAAGATGATCCAGATGAATTAAAATCAAGAATTATTGACTGTCTTGAAACTTCAGAATCAAGATTGAAGCTTC
TTTCAAAAGAAAGTAGTGTTGAAACAATTGAATTAAAACGTGGAAGTAATTCGATTTATGTCCAATATGATGATGTTATG
TTCTTTGAATCATCTACTAAATCGCATCGATTGATTGCACATCTTGATAATCGTCAAATTGAGTTTTATGGCAATTTAAA
AGAATTAGATCAACTTGATGAGCGATTTTTCAGATGTCATAATAGCTTTGTCGTCAATAGACACAATATAGATTCTATTG
ACTCTAAGTCACGTGTTGTCTATTTTAAAAATAATGAACATTGCTATGCATCTGTTAGAAATGTCAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380HJP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

85.714

100

0.857