Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HSZ47_RS11430 Genome accession   NZ_CP054434
Coordinates   2328466..2329842 (-) Length   458 a.a.
NCBI ID   WP_174538793.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-035     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2323466..2334842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ47_RS11415 (HSZ47_11415) cysE 2324492..2325133 (-) 642 WP_047502426.1 serine O-acetyltransferase -
  HSZ47_RS11420 (HSZ47_11420) gltX 2325480..2326934 (-) 1455 WP_002484175.1 glutamate--tRNA ligase -
  HSZ47_RS11425 (HSZ47_11425) - 2327352..2328410 (-) 1059 WP_037539107.1 PIN/TRAM domain-containing protein -
  HSZ47_RS11430 (HSZ47_11430) radA 2328466..2329842 (-) 1377 WP_174538793.1 DNA repair protein RadA Machinery gene
  HSZ47_RS11435 (HSZ47_11435) - 2330190..2332652 (-) 2463 WP_011303851.1 ATP-dependent Clp protease ATP-binding subunit -
  HSZ47_RS11440 (HSZ47_11440) - 2332664..2333674 (-) 1011 WP_047502406.1 protein arginine kinase -
  HSZ47_RS11445 (HSZ47_11445) - 2333667..2334218 (-) 552 WP_011303853.1 UvrB/UvrC motif-containing protein -
  HSZ47_RS11450 (HSZ47_11450) - 2334235..2334696 (-) 462 WP_011303854.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50641.34 Da        Isoelectric Point: 8.2452

>NTDB_id=452474 HSZ47_RS11430 WP_174538793.1 2328466..2329842(-) (radA) [Staphylococcus saprophyticus strain UTI-035]
MAKKKVIFECMACGYQSPKWMGKCPNCGGWNQMEEIVEQKAASPKHGVRSRYNVSKVQKLNEIKHETTPRVKTNSNEFNR
VLGGGIVNGSLVLIGGDPGIGKSTLLLQICASLSQSKNVLYITGEESLSQTKLRAERLDEDSSELNVFAETDLEVIHETV
KQIKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQTGLKGVKNPSEMFLEERSANVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIIIATASSFKDLTVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAEKLGFKRVIIPESNIGGWQFPEGIKVIGVKSVHEALKYALTKHKK

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=452474 HSZ47_RS11430 WP_174538793.1 2328466..2329842(-) (radA) [Staphylococcus saprophyticus strain UTI-035]
TTGGCTAAAAAGAAAGTGATTTTTGAATGTATGGCATGTGGTTATCAGTCACCGAAATGGATGGGGAAATGCCCAAACTG
TGGTGGTTGGAATCAAATGGAAGAAATTGTCGAACAAAAGGCAGCCAGTCCAAAACATGGCGTACGCAGTCGATACAATG
TATCTAAAGTACAAAAATTAAATGAAATTAAACATGAAACAACACCTAGGGTTAAAACAAATTCAAACGAATTTAACCGC
GTACTAGGTGGAGGTATTGTTAATGGTTCACTTGTCTTAATTGGTGGTGATCCTGGTATTGGGAAATCGACATTACTATT
ACAAATTTGTGCATCATTATCCCAATCTAAAAACGTATTATATATCACTGGTGAAGAATCATTGAGTCAAACGAAATTAA
GAGCGGAAAGATTAGATGAGGATTCTAGTGAATTAAATGTATTTGCCGAAACAGATTTAGAAGTAATCCATGAAACGGTT
AAACAAATTAAACCAGATTTACTTGTTGTGGATTCTATACAAACAATATTCCACCCTGAAATCAGCTCGGCACCAGGCTC
GGTTTCACAAGTTAGAGAAAGTACGCAGAGCTTAATGAATATAGCTAAACAGATGAATATTGCGACGTTTATTGTCGGAC
ATGTAACAAAAGAAGGTCAAATCGCTGGGCCGCGTTTACTTGAACATATGGTGGACACAGTGCTTTACTTCGAAGGTGAT
GAACACCATGCATATCGTATTTTAAGAGCTGTGAAAAACCGTTTTGGTTCTACAAATGAAATGGGTATCTTTGAGATGAA
GCAAACAGGTTTGAAAGGCGTTAAAAACCCTTCGGAAATGTTTCTTGAAGAACGTTCAGCCAATGTACCAGGTTCCACGA
TTGTTTCTACCATGGAAGGTACGAGACCTTTATTGATTGAAGTACAAGCATTAGTGACACCGACAACTTTTAATAATCCG
AGACGTATGGCAACGGGCATAGATCATAATCGATTGAGTTTGCTCATGGCCGTATTAGAAAAGAAAGAAAATTATCTCCT
TCAGCAGCAAGATGCTTATATCAAAGTTGCGGGTGGTGTGAGACTTACTGAGCCAGCAGTAGATTTAGGTATCATTATTG
CGACGGCTTCAAGCTTTAAAGATTTAACGGTGGACGGCTTGGACTGTTTCATCGGTGAGGTAGGTCTTACTGGAGAAGTC
AGACGTGTTTCTCGAATAGAACAACGTGTCCAAGAAGCTGAAAAATTAGGGTTCAAACGTGTGATTATCCCTGAGTCCAA
TATTGGGGGATGGCAATTTCCTGAAGGTATAAAAGTAATTGGGGTTAAAAGTGTTCATGAAGCTTTAAAATACGCATTAA
CAAAACATAAAAAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

AAA domain (AAA_25)

(67-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.083

99.782

0.659
  radA Streptococcus pneumoniae Rx1

60

98.253

0.59
  radA Streptococcus pneumoniae D39

60

98.253

0.59
  radA Streptococcus pneumoniae R6

60

98.253

0.59
  radA Streptococcus pneumoniae TIGR4

60

98.253

0.59
  radA Streptococcus mitis NCTC 12261

60

98.253

0.59
  radA Streptococcus mitis SK321

60

98.253

0.59