Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HTY51_RS17865 Genome accession   NZ_CP054424
Coordinates   3693549..3695123 (+) Length   524 a.a.
NCBI ID   WP_174253997.1    Uniprot ID   -
Organism   Rhodoferax sp. BAB1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3688549..3700123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY51_RS17845 (HTY51_17845) - 3689371..3690915 (+) 1545 WP_174253994.1 methyl-accepting chemotaxis protein -
  HTY51_RS17850 (HTY51_17850) gshB 3690925..3691887 (-) 963 WP_174253995.1 glutathione synthase -
  HTY51_RS17855 (HTY51_17855) lptA 3692094..3692690 (+) 597 WP_174253996.1 lipopolysaccharide transport periplasmic protein LptA -
  HTY51_RS17860 (HTY51_17860) lptB 3692705..3693517 (+) 813 WP_371733877.1 LPS export ABC transporter ATP-binding protein -
  HTY51_RS17865 (HTY51_17865) rpoN/rpoN1 3693549..3695123 (+) 1575 WP_174253997.1 RNA polymerase factor sigma-54 Machinery gene
  HTY51_RS17870 (HTY51_17870) - 3695120..3696379 (+) 1260 WP_174253998.1 class I SAM-dependent RNA methyltransferase -
  HTY51_RS17875 (HTY51_17875) - 3696376..3696789 (+) 414 WP_174253999.1 putative toxin-antitoxin system toxin component, PIN family -
  HTY51_RS17880 (HTY51_17880) - 3696811..3697602 (+) 792 WP_174254000.1 YecA family protein -
  HTY51_RS17885 (HTY51_17885) - 3697758..3698657 (-) 900 WP_174254001.1 alpha/beta fold hydrolase -
  HTY51_RS17890 (HTY51_17890) - 3698654..3699073 (-) 420 WP_174254336.1 CinA family protein -
  HTY51_RS17895 (HTY51_17895) - 3699133..3699681 (-) 549 WP_174254002.1 phosphatidylglycerophosphatase A -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 57741.06 Da        Isoelectric Point: 4.8286

>NTDB_id=452442 HTY51_RS17865 WP_174253997.1 3693549..3695123(+) (rpoN/rpoN1) [Rhodoferax sp. BAB1]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELNQEVEQLLDENPFLERADDSVEREAHGLERADTPVAQDEGDYDYSSS
ASSSEAPDESVAVSSLESEGSWEGDGSVDMSPDDSEWGGDAPARNGAREDDEADATELARSQESLQDFLKRQALSLRLGA
EDRAALQFLIESLNEDGYLEDTLESLAQGLAGEEGEHLEALLAHFELALRLLQSLEPTGVGARNMAECLRLQLLALQAEA
MRGAQNLPEPAVVAQALRMVEQPPELLARRDLRKLAQLCGGSEALTREALGLVARLEPKPGRRFVNVERNVIVPDVLVVR
SGSGAQTRFRVQLNPDIMPRLRVHDIYANALKGHKAGGRSADNHAALQQRLQEARWFIKNIQQRFDTILRVSSAIVERQK
NFFMHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTYELKYFFGSGLGTESGGNASSTAVRALIKQFVSAES
VKKPLSDSQLSEMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=452442 HTY51_RS17865 WP_174253997.1 3693549..3695123(+) (rpoN/rpoN1) [Rhodoferax sp. BAB1]
ATGAAACAGGGACTGTCGCTGCGGGTCTCCCAGCATCTGGCGCTCACGCCCCAGCTGCAGCAGTCCATCCGTCTCCTGCA
GCTCTCCACGCTGGAGCTCAACCAGGAGGTCGAGCAACTGCTCGACGAGAACCCCTTCCTGGAGCGCGCCGACGACAGCG
TTGAGCGTGAGGCCCATGGCCTGGAGCGTGCCGATACCCCGGTGGCGCAGGACGAGGGCGACTACGACTACAGCAGCAGC
GCTTCGTCCAGCGAGGCGCCGGACGAAAGCGTCGCGGTGAGCAGCCTGGAGAGCGAGGGCAGCTGGGAGGGCGATGGCAG
CGTGGACATGTCGCCCGACGACAGCGAGTGGGGCGGTGACGCGCCGGCGCGCAACGGCGCGCGCGAGGACGATGAGGCCG
ATGCCACCGAGCTGGCGCGCAGCCAGGAATCGCTGCAGGACTTCCTCAAGCGCCAGGCCCTGTCCCTGCGCCTGGGGGCC
GAAGACCGTGCCGCCCTGCAGTTCCTGATCGAGTCCCTCAACGAGGACGGTTACCTGGAGGACACGCTCGAATCGCTGGC
CCAGGGCCTGGCCGGCGAGGAAGGCGAGCATCTGGAGGCCCTGCTCGCCCACTTCGAGCTCGCGCTGCGTCTGCTGCAAA
GCCTGGAGCCCACCGGCGTGGGTGCGCGCAACATGGCCGAGTGCCTGCGCCTGCAGTTGCTGGCCCTGCAGGCCGAGGCC
ATGCGCGGCGCGCAGAACCTGCCGGAACCGGCCGTGGTGGCCCAGGCCCTGCGCATGGTCGAGCAGCCGCCGGAACTGCT
GGCGCGGCGCGATCTCCGCAAACTCGCCCAGCTCTGTGGCGGCAGCGAAGCCCTGACGCGTGAGGCCCTGGGCCTGGTGG
CGCGGCTGGAGCCCAAGCCCGGGCGGCGTTTCGTCAATGTCGAGCGCAACGTCATCGTGCCCGACGTGCTGGTCGTGCGC
AGCGGCAGCGGCGCGCAGACCCGCTTTCGCGTGCAGCTCAACCCGGACATCATGCCGCGGCTGCGCGTGCACGATATCTA
TGCCAATGCGCTCAAGGGCCACAAGGCCGGCGGCCGCAGCGCCGACAACCACGCCGCGCTGCAGCAGCGCCTGCAGGAGG
CGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCCTGCGTGTCTCCAGCGCCATCGTCGAGCGACAGAAG
AACTTCTTCATGCACGGCGAGCTGGCCATGCGCCCGCTGGTGCTGCGCGAGATCGCCGACGAGCTCGGCCTGCACGAGTC
CACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCACGCCCTTCGGCACCTACGAGCTCAAGTACTTCTTCGGCTCGG
GCCTGGGCACCGAGTCCGGCGGCAATGCCTCCAGCACGGCGGTGCGCGCGCTGATCAAGCAGTTCGTCAGCGCCGAGAGT
GTCAAGAAACCCCTGTCCGACAGCCAGCTCTCCGAGATGCTCAAGGAGCAGGGTATCGAGTGCGCGCGACGCACGGTCGC
CAAATACCGCGAGGCGCTCAAGATCGCGCCCGCGAATTTACGGAAAGCCTTGTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(136-347)

Sigma-54, DNA binding domain (Sigma54_DBD)

(366-522)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.94

100

0.517