Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LL3_RS07650 Genome accession   NC_017190
Coordinates   1481384..1482520 (-) Length   378 a.a.
NCBI ID   WP_014471777.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LL3     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1470636..1514229 1481384..1482520 within 0


Gene organization within MGE regions


Location: 1470636..1514229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL3_RS07565 (LL3_01591) - 1471207..1471509 (+) 303 WP_014471761.1 hypothetical protein -
  LL3_RS07570 (LL3_01592) - 1471658..1471900 (-) 243 WP_014471762.1 hypothetical protein -
  LL3_RS07575 (LL3_01593) - 1472010..1472672 (+) 663 WP_014417662.1 hypothetical protein -
  LL3_RS07585 (LL3_01595) - 1473919..1474140 (-) 222 WP_014471764.1 hypothetical protein -
  LL3_RS07590 (LL3_01596) - 1474338..1474682 (-) 345 WP_014471765.1 hypothetical protein -
  LL3_RS21400 (LL3_01597) - 1474710..1474865 (-) 156 WP_014471766.1 hypothetical protein -
  LL3_RS07595 (LL3_01598) - 1474855..1475220 (-) 366 WP_014471767.1 hypothetical protein -
  LL3_RS07600 (LL3_01599) - 1475368..1475769 (-) 402 WP_014471768.1 hypothetical protein -
  LL3_RS07605 - 1475906..1476142 (+) 237 WP_236823560.1 helix-turn-helix transcriptional regulator -
  LL3_RS07610 (LL3_01600) - 1476268..1476549 (+) 282 WP_014471769.1 hypothetical protein -
  LL3_RS07615 - 1476598..1476840 (+) 243 WP_041915540.1 hypothetical protein -
  LL3_RS07620 - 1476879..1477397 (-) 519 WP_041915541.1 hypothetical protein -
  LL3_RS07625 (LL3_01601) - 1477518..1477763 (-) 246 WP_014471770.1 helix-turn-helix domain-containing protein -
  LL3_RS21655 (LL3_01603) - 1478275..1478412 (+) 138 WP_014471772.1 hypothetical protein -
  LL3_RS07630 (LL3_01604) - 1478388..1478984 (+) 597 WP_014471773.1 hypothetical protein -
  LL3_RS07635 (LL3_01605) - 1479018..1479326 (-) 309 WP_014471774.1 hypothetical protein -
  LL3_RS07640 (LL3_01606) - 1479339..1480763 (-) 1425 WP_041915607.1 hypothetical protein -
  LL3_RS07645 (LL3_01607) - 1480813..1481178 (+) 366 WP_041915542.1 DUF1433 domain-containing protein -
  LL3_RS21405 - 1481221..1481394 (-) 174 WP_169061491.1 hypothetical protein -
  LL3_RS07650 (LL3_01608) rapC 1481384..1482520 (-) 1137 WP_014471777.1 RapH N-terminal domain-containing protein Regulator
  LL3_RS07655 (LL3_01609) - 1482701..1483531 (-) 831 WP_014417674.1 SHOCT domain-containing protein -
  LL3_RS07660 (LL3_01611) - 1483701..1486319 (-) 2619 WP_041915543.1 phage tail protein -
  LL3_RS07665 (LL3_01612) - 1486392..1491668 (-) 5277 WP_373419134.1 phage tail tape measure protein -
  LL3_RS21965 - 1491876..1493441 (-) 1566 Protein_1525 phage tail tape measure protein -
  LL3_RS07675 (LL3_01613) - 1494188..1495321 (-) 1134 WP_014471781.1 GIY-YIG nuclease family protein -
  LL3_RS07680 (LL3_01614) - 1495495..1496373 (+) 879 WP_014471782.1 tyrosine-type recombinase/integrase -
  LL3_RS21410 (LL3_01615) - 1496484..1497989 (+) 1506 WP_014471783.1 hypothetical protein -
  LL3_RS21415 (LL3_01616) - 1498084..1498251 (-) 168 WP_014417681.1 hypothetical protein -
  LL3_RS07690 (LL3_01617) - 1498525..1499190 (+) 666 WP_014471784.1 hypothetical protein -
  LL3_RS07695 (LL3_01618) - 1499202..1499690 (-) 489 WP_014471785.1 hypothetical protein -
  LL3_RS07700 (LL3_01619) - 1499687..1499848 (-) 162 WP_014471786.1 XkdX family protein -
  LL3_RS07705 (LL3_01620) - 1499849..1500232 (-) 384 WP_014471787.1 hypothetical protein -
  LL3_RS07710 (LL3_01621) - 1500229..1501548 (-) 1320 WP_014471788.1 hypothetical protein -
  LL3_RS07715 (LL3_01622) - 1501587..1502156 (-) 570 WP_014417686.1 HNH endonuclease -
  LL3_RS07720 (LL3_01623) - 1502167..1502361 (-) 195 WP_014471790.1 hypothetical protein -
  LL3_RS07730 (LL3_01625) - 1502978..1505824 (-) 2847 WP_014471792.1 hypothetical protein -
  LL3_RS07735 (LL3_01626) - 1506169..1507065 (-) 897 WP_014471793.1 hypothetical protein -
  LL3_RS07740 (LL3_01627) - 1507610..1508575 (+) 966 WP_014471794.1 AimR family lysis-lysogeny pheromone receptor -
  LL3_RS21205 - 1508605..1508748 (+) 144 WP_158306274.1 hypothetical protein -
  LL3_RS21210 (LL3_01628) - 1508971..1509129 (+) 159 WP_014471795.1 hypothetical protein -
  LL3_RS07745 (LL3_01629) - 1509318..1509665 (+) 348 WP_014471796.1 hypothetical protein -
  LL3_RS07750 (LL3_01630) - 1509682..1509960 (+) 279 WP_014471797.1 hypothetical protein -
  LL3_RS07755 (LL3_01631) - 1509967..1510524 (+) 558 WP_014471798.1 hypothetical protein -
  LL3_RS07760 (LL3_01632) - 1510604..1510786 (+) 183 WP_014471799.1 hypothetical protein -
  LL3_RS07765 (LL3_01633) - 1510783..1511322 (+) 540 WP_014471800.1 hypothetical protein -
  LL3_RS07770 (LL3_01634) - 1511319..1511741 (+) 423 WP_014471801.1 hypothetical protein -
  LL3_RS07775 (LL3_01635) - 1511804..1512253 (+) 450 WP_014471802.1 hypothetical protein -
  LL3_RS07780 (LL3_01637) - 1512520..1514229 (+) 1710 WP_014471804.1 recombinase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44679.04 Da        Isoelectric Point: 4.9988

>NTDB_id=45244 LL3_RS07650 WP_014471777.1 1481384..1482520(-) (rapC) [Bacillus amyloliquefaciens LL3]
MKQLISSSKVGVKINEWYKYIRMFSVPDAEVLKSEVEQEINAMEENQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPEIS
DLLEKIESSQAKLKGILEYYFNFFRGMYEFEEYEYLKAISFYKQAEKKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIESYRAHETYSVREIQCSFVIGLNYLDMEYPEKAIPHFHKAYKKALEIDMPRLAGSALYNLGISSFSEEKFDEAI
EYFKEGVLIYEQNGYEHANRLLDILFMLAKTNFKVNKKTDGTAAYKHGLSLAKNLNDEVLTKMFDFLNALYIDDNKETLN
EILTYLEFKTMFSDVEDLATDAAKYYTKNEDHKAAGLFYEKVLYAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=45244 LL3_RS07650 WP_014471777.1 1481384..1482520(-) (rapC) [Bacillus amyloliquefaciens LL3]
TTGAAACAGTTAATCTCCTCATCCAAAGTCGGCGTGAAGATTAATGAGTGGTACAAGTATATTCGCATGTTTAGTGTTCC
TGATGCAGAGGTGCTGAAATCAGAAGTGGAACAAGAAATAAACGCTATGGAAGAAAATCAGGATTTATTGTTGTACTATT
CCCTCATGTGTTTTAGACATCAATTAATGCTTGATTATCTTGAGCCAAAAACCATGAATGAAGAACGACCTGAGATTTCA
GACTTATTAGAAAAGATCGAAAGTAGCCAAGCTAAATTGAAAGGAATTCTTGAATATTACTTTAACTTTTTCCGTGGGAT
GTATGAATTTGAAGAATACGAATATCTTAAAGCAATAAGTTTTTACAAACAAGCGGAAAAGAAGCTGTCACTTGTAGCCG
ACGAAATTGAGCGAGCAGAGTTTCATTACAAAGTCGCTGAAATTTATTATCACATGAAACAAACACACATGTCGATGCAC
CATATTGTTCAAGCAATCGAAAGCTACAGAGCGCATGAAACCTATTCTGTTAGAGAAATTCAATGTTCTTTTGTTATCGG
TCTAAATTATTTAGACATGGAGTATCCAGAAAAGGCTATCCCTCATTTTCATAAAGCTTATAAAAAAGCACTTGAAATTG
ATATGCCAAGGTTAGCTGGATCCGCTCTATATAATTTAGGGATCTCTTCTTTTTCTGAAGAAAAGTTCGATGAGGCTATT
GAGTATTTCAAAGAAGGAGTGTTGATCTATGAGCAGAACGGATATGAACATGCTAACCGCTTATTAGACATTCTTTTCAT
GTTAGCGAAAACGAACTTCAAGGTAAATAAGAAAACTGACGGAACAGCTGCTTATAAACATGGTCTGTCATTGGCTAAAA
ACTTAAATGATGAAGTATTAACCAAAATGTTTGATTTCCTAAATGCTCTTTACATTGACGATAATAAAGAAACACTAAAT
GAGATTCTTACTTATTTAGAATTTAAAACAATGTTTTCTGATGTGGAGGACTTAGCAACCGACGCAGCGAAGTATTATAC
AAAAAATGAAGACCATAAAGCGGCTGGATTATTTTATGAGAAAGTGCTTTATGCCCAAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(222-252)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.413

100

0.484
  rapF Bacillus subtilis subsp. subtilis str. 168

44.882

100

0.452

Multiple sequence alignment