Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HTY51_RS15875 Genome accession   NZ_CP054424
Coordinates   3271446..3272813 (-) Length   455 a.a.
NCBI ID   WP_174253631.1    Uniprot ID   A0A6N0BTC9
Organism   Rhodoferax sp. BAB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3266446..3277813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY51_RS15840 (HTY51_15840) - 3267026..3267253 (+) 228 WP_174253626.1 hypothetical protein -
  HTY51_RS15845 (HTY51_15845) waaF 3267501..3268430 (-) 930 WP_254606905.1 lipopolysaccharide heptosyltransferase II -
  HTY51_RS15850 (HTY51_15850) - 3268507..3268713 (-) 207 WP_174253627.1 zinc-finger domain-containing protein -
  HTY51_RS15855 (HTY51_15855) - 3268724..3269662 (-) 939 WP_174253628.1 branched-chain amino acid transaminase -
  HTY51_RS15860 (HTY51_15860) - 3269715..3270059 (-) 345 WP_254606906.1 glycerate kinase -
  HTY51_RS15865 (HTY51_15865) - 3270164..3270997 (-) 834 WP_174253629.1 aldo/keto reductase -
  HTY51_RS15870 (HTY51_15870) - 3270994..3271401 (-) 408 WP_174253630.1 heme-binding protein -
  HTY51_RS15875 (HTY51_15875) radA 3271446..3272813 (-) 1368 WP_174253631.1 DNA repair protein RadA Machinery gene
  HTY51_RS15880 (HTY51_15880) hpaR 3272938..3273372 (+) 435 WP_174253632.1 homoprotocatechuate degradation operon regulator HpaR -
  HTY51_RS15885 (HTY51_15885) - 3273369..3274040 (+) 672 WP_174253633.1 fumarylacetoacetate hydrolase family protein -
  HTY51_RS15890 (HTY51_15890) - 3274037..3274789 (+) 753 WP_174253634.1 fumarylacetoacetate hydrolase family protein -
  HTY51_RS15895 (HTY51_15895) hpaE 3274786..3276264 (+) 1479 WP_174253635.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -
  HTY51_RS15900 (HTY51_15900) hpaD 3276352..3277275 (+) 924 WP_174253636.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  HTY51_RS15905 (HTY51_15905) - 3277285..3277710 (+) 426 WP_174253637.1 5-carboxymethyl-2-hydroxymuconate Delta-isomerase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 47883.23 Da        Isoelectric Point: 6.9991

>NTDB_id=452438 HTY51_RS15875 WP_174253631.1 3271446..3272813(-) (radA) [Rhodoferax sp. BAB1]
MAKDKTIYTCNECGGISPKWLGKCPHCNAWNSLIESVAESAAPTKNRFAALAKTAEVVALADIEASDVERTPTGQDELDR
VLGGGIVEGGVVLIGGDPGIGKSTLLLQALDALQRAGQKTLYVTGEESGAQVALRARRLGLDGSRVQVLAEIQLEKILAT
LDAHQPAIAVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRAAKASGTAIVLVGHVTKEGALAGPRVLEHMVDTVLYFEG
DTHSSFRLIRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHAEPVPGSCVMVTLEGTRPMLVEIQALVDSGGPSP
RRLSVGLDRDRLAMLLAVLHRHAGVACLDQDVFVNAVGGVRISEPAADLAVMLAITSSLRGRPLPKGFLAFGEVGLAGEV
RPAPRGQERLKEAAKLGFSVAVVPKANAPKKAIEGLTIHAVERVEEALQVLRTLE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=452438 HTY51_RS15875 WP_174253631.1 3271446..3272813(-) (radA) [Rhodoferax sp. BAB1]
ATGGCGAAAGACAAGACCATCTACACCTGCAACGAGTGCGGCGGCATCAGTCCCAAGTGGCTGGGCAAGTGCCCGCATTG
CAATGCCTGGAACTCGCTGATCGAGTCCGTGGCGGAGAGCGCCGCGCCGACCAAGAATCGTTTTGCCGCGCTCGCGAAAA
CCGCCGAGGTGGTCGCCCTGGCCGACATCGAGGCTTCCGATGTGGAGCGCACACCCACCGGTCAGGACGAACTGGACCGG
GTGCTGGGCGGCGGCATCGTCGAAGGCGGGGTGGTGCTGATCGGTGGCGATCCGGGCATCGGCAAGTCCACGCTGCTGCT
GCAGGCGCTGGACGCGCTGCAGCGCGCCGGCCAGAAGACGCTCTACGTCACGGGCGAAGAAAGCGGCGCCCAGGTCGCCC
TGCGCGCGCGCCGCCTGGGGCTGGACGGCTCGCGGGTGCAGGTGTTGGCCGAGATCCAGCTCGAGAAGATTCTGGCCACG
CTGGATGCGCACCAGCCGGCGATAGCCGTGATCGACTCCATCCAGACCGTGTATTCCGACCAGCTCACCTCCGCGCCCGG
TTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCACCTCACGCGCGCCGCCAAGGCCAGCGGCACGGCCATCGTGCTGGTGG
GCCATGTCACCAAAGAGGGTGCGCTGGCCGGCCCGCGTGTGCTGGAGCACATGGTGGACACGGTGCTCTACTTCGAGGGT
GATACGCACAGCAGCTTCCGCCTGATCCGTGCCATCAAGAACCGCTTTGGCGCCGTCAACGAGATCGGCGTCTTCGCCAT
GACGGAGAAGGGCCTGAAGGGTGTGAGCAACCCCAGCGCCATCTTCCTCTCTCAACATGCCGAGCCCGTGCCGGGCAGCT
GCGTGATGGTCACGCTGGAAGGCACGCGCCCCATGCTGGTGGAGATCCAGGCGCTGGTCGACAGCGGCGGGCCGTCGCCC
CGGCGCCTGTCCGTGGGCCTGGACCGCGACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCATGCCGGCGTGGCCTG
CCTGGACCAGGACGTGTTCGTCAATGCCGTCGGCGGCGTGCGCATCAGCGAACCGGCGGCCGATCTGGCGGTGATGCTGG
CTATCACCTCCTCGCTGCGCGGAAGGCCCCTGCCCAAGGGTTTCCTGGCCTTCGGCGAAGTGGGCCTGGCCGGCGAGGTG
CGGCCCGCGCCGCGCGGTCAGGAGCGCCTGAAGGAAGCGGCCAAGCTGGGCTTCAGCGTGGCCGTGGTGCCCAAGGCCAA
TGCGCCCAAGAAGGCCATCGAAGGCCTGACCATCCACGCGGTGGAGCGCGTGGAAGAGGCGCTGCAGGTGCTGCGCACGC
TGGAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(358-450)

AAA domain (AAA_25)

(63-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0BTC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.802

100

0.492
  radA Streptococcus mitis NCTC 12261

46.444

98.901

0.459
  radA Streptococcus pneumoniae Rx1

47.273

96.703

0.457
  radA Streptococcus pneumoniae D39

47.273

96.703

0.457
  radA Streptococcus pneumoniae R6

47.273

96.703

0.457
  radA Streptococcus pneumoniae TIGR4

47.273

96.703

0.457
  radA Streptococcus mitis SK321

47.38

96.484

0.457