Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HTY51_RS12690 Genome accession   NZ_CP054424
Coordinates   2650250..2651209 (+) Length   319 a.a.
NCBI ID   WP_174253062.1    Uniprot ID   A0A6N0BT69
Organism   Rhodoferax sp. BAB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2645250..2656209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY51_RS12665 (HTY51_12665) - 2646105..2646296 (-) 192 WP_174253058.1 hypothetical protein -
  HTY51_RS12670 (HTY51_12670) - 2646304..2646768 (-) 465 WP_254606879.1 isoprenylcysteine carboxylmethyltransferase family protein -
  HTY51_RS12675 (HTY51_12675) rsmD 2646869..2647492 (-) 624 WP_174253059.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HTY51_RS12680 (HTY51_12680) - 2647482..2648813 (-) 1332 WP_254606880.1 pitrilysin family protein -
  HTY51_RS12685 (HTY51_12685) - 2648835..2650220 (-) 1386 WP_174253061.1 pitrilysin family protein -
  HTY51_RS12690 (HTY51_12690) pilA 2650250..2651209 (+) 960 WP_174253062.1 signal recognition particle-docking protein FtsY Machinery gene
  HTY51_RS12695 (HTY51_12695) - 2651314..2653632 (+) 2319 WP_254606881.1 bifunctional diguanylate cyclase/phosphodiesterase -
  HTY51_RS12700 (HTY51_12700) - 2653639..2654580 (-) 942 WP_174253063.1 MBL fold metallo-hydrolase -
  HTY51_RS12705 (HTY51_12705) - 2654595..2655338 (-) 744 WP_174253064.1 DUF4395 domain-containing protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 34101.30 Da        Isoelectric Point: 6.7670

>NTDB_id=452430 HTY51_RS12690 WP_174253062.1 2650250..2651209(+) (pilA) [Rhodoferax sp. BAB1]
MFSFFKKKAPAEATSAPKEPARQGWLGKLRAGLRKTGTSISTVFTGMQIDDALYEQLEEALLMADAGVAATQFLLDDLRR
RVRENKATEPAAVKRLLIDALADLLAPLEKPLAIGAHQPTVIMVAGVNGAGKTTSIGKLTHHLSNDGATVLLAAADTFRA
AAREQLMVWAERNTVEIVHQAGGDPASVCFDAVSAGKARGKDVVLVDTAGRLPTQLHLMEELRKIKRVVQKADETAPHEV
LLVIDGNTGQNALAQVRAFDEALGLSGLIVTKLDGTAKGGVLAAIARERPIPVYFIGVGEQLDELETFKAREFAQALLD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=452430 HTY51_RS12690 WP_174253062.1 2650250..2651209(+) (pilA) [Rhodoferax sp. BAB1]
ATGTTCAGTTTTTTCAAGAAAAAAGCCCCTGCTGAAGCCACTTCCGCCCCCAAGGAACCGGCGCGCCAGGGCTGGCTGGG
CAAGCTGCGCGCGGGCCTGCGCAAGACCGGGACCAGCATCAGCACCGTCTTCACCGGCATGCAGATCGATGACGCGCTCT
ACGAGCAGCTGGAAGAAGCCCTGCTGATGGCCGACGCCGGGGTGGCGGCCACCCAGTTCCTGCTGGACGACCTCAGGCGC
CGCGTCAGGGAAAACAAGGCCACCGAACCCGCGGCCGTCAAGCGCCTGCTCATCGATGCCCTGGCCGATCTGCTGGCGCC
GCTGGAAAAACCCCTGGCCATCGGCGCGCACCAGCCCACGGTGATCATGGTGGCCGGTGTCAACGGCGCGGGCAAGACCA
CCTCCATCGGCAAGCTCACGCATCACCTCTCCAACGACGGTGCCACGGTGCTGCTGGCCGCGGCCGACACCTTCCGCGCC
GCCGCGCGCGAACAGCTCATGGTCTGGGCCGAGCGCAACACGGTGGAGATCGTGCACCAGGCCGGCGGCGACCCGGCCTC
GGTCTGCTTCGACGCGGTCAGCGCCGGCAAGGCCCGCGGCAAGGACGTGGTGCTGGTGGACACGGCGGGGCGCCTGCCCA
CCCAGCTGCACCTGATGGAAGAGCTGCGCAAGATCAAGCGGGTGGTGCAGAAGGCCGACGAGACCGCGCCGCACGAGGTG
CTGCTGGTGATCGACGGCAACACCGGCCAGAACGCACTGGCCCAGGTGCGCGCCTTCGACGAGGCGCTGGGCCTGAGCGG
CCTGATCGTCACCAAACTCGACGGCACGGCCAAGGGCGGCGTGCTGGCGGCCATTGCACGCGAGCGACCCATCCCGGTTT
ACTTCATCGGCGTGGGCGAGCAGCTCGACGAGCTGGAGACCTTCAAGGCGAGGGAGTTCGCGCAGGCCCTGCTGGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(119-318)

SRP54-type protein, helical bundle domain (SRP54_N)

(37-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0BT69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

56.958

96.865

0.552