Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   HTZ88_RS07215 Genome accession   NZ_CP054418
Coordinates   1417842..1419629 (-) Length   595 a.a.
NCBI ID   WP_135197730.1    Uniprot ID   -
Organism   Leuconostoc carnosum strain 4010     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1412842..1424629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ88_RS07185 (HTZ88_07125) - 1412970..1413353 (-) 384 WP_014974767.1 VOC family protein -
  HTZ88_RS07190 (HTZ88_07130) - 1413427..1414155 (-) 729 WP_135197728.1 fructose permease -
  HTZ88_RS07195 (HTZ88_07135) - 1414160..1415176 (-) 1017 WP_014974769.1 zinc-dependent alcohol dehydrogenase family protein -
  HTZ88_RS07200 (HTZ88_07140) - 1415359..1416327 (+) 969 WP_135197729.1 LacI family DNA-binding transcriptional regulator -
  HTZ88_RS07205 (HTZ88_07145) - 1416396..1417313 (-) 918 WP_019040113.1 phosphoglycerate dehydrogenase -
  HTZ88_RS07210 (HTZ88_07150) - 1417366..1417767 (-) 402 WP_014974772.1 cytidine deaminase -
  HTZ88_RS07215 (HTZ88_07155) pepF 1417842..1419629 (-) 1788 WP_135197730.1 oligoendopeptidase F Regulator
  HTZ88_RS07220 (HTZ88_07160) - 1419700..1420731 (-) 1032 WP_135197731.1 competence protein CoiA -
  HTZ88_RS07225 (HTZ88_07165) - 1420780..1422213 (-) 1434 WP_135197732.1 ABC transporter substrate-binding protein/permease -
  HTZ88_RS07230 (HTZ88_07170) - 1422322..1423074 (-) 753 WP_135197733.1 amino acid ABC transporter ATP-binding protein -
  HTZ88_RS07235 (HTZ88_07175) - 1423071..1424513 (-) 1443 WP_135197734.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 67839.67 Da        Isoelectric Point: 4.6381

>NTDB_id=452415 HTZ88_RS07215 WP_135197730.1 1417842..1419629(-) (pepF) [Leuconostoc carnosum strain 4010]
MAQPLRNEVPKSLTWDLTTIFPTDEAWQAAFEKIQNDTQKVRQFAGHVGDSAETVQAALEANLALERQLESVHVYANQIY
DQDTTNQKYAAFYARVQGLWATVSEATAYFQPEVLNIPDADLATYLTTDGLKKYAHLFETLKAQKPYTLPADQEALLAGA
SDIFNASENTFGALDNSDITFGDVHTESREIVPLTNGLYSLLLESKNRALRQEAFETLYDSYIALQNTFASTLSSHVKGH
NFLARTRHYQSAREAAILPHQVPTTVFQTLIKTVDEHLPLLHRFVSLRKKILNVEDVHSYDLYVPLVDEIDFEVTYEKAK
DIVLAALAPLGEDYLAVVQKAFDERWIDVIENKGKRTGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSIHSYLTRH
NQPYYYGDYPIFLAEIASTTNESLLTDYLLKNNDDPKFQAYILNQYLDGFKGTVFRQTQFAEFENWIHEQSAQGEALTAD
KMSTYYGNLNQKYYGNDLFPDEEIAFEWSRIPHFYYNFYVYQYATGEAAATTLAERILNQNGAEAYKNYLKAGSSDYPLN
VIAKAGVDMSQADYLNQAFDVFEERLNQLEMLLKK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=452415 HTZ88_RS07215 WP_135197730.1 1417842..1419629(-) (pepF) [Leuconostoc carnosum strain 4010]
ATGGCACAACCATTACGTAATGAAGTACCGAAATCCCTGACATGGGATCTCACAACGATTTTTCCGACCGACGAAGCTTG
GCAAGCAGCTTTTGAAAAAATACAAAATGATACTCAGAAAGTTCGCCAATTTGCTGGACATGTTGGTGATTCAGCAGAAA
CAGTACAAGCAGCTTTAGAAGCGAATCTAGCATTAGAACGTCAACTCGAGAGCGTACATGTTTATGCCAATCAAATTTAT
GACCAAGATACGACTAATCAAAAGTATGCGGCTTTTTATGCCCGTGTACAAGGATTATGGGCGACGGTCAGTGAAGCAAC
AGCGTATTTTCAACCAGAAGTGTTGAATATTCCTGATGCGGATTTGGCAACATATTTAACGACCGACGGCTTAAAAAAGT
ATGCACATTTATTTGAGACACTAAAAGCACAAAAGCCATACACATTACCGGCAGATCAAGAAGCACTTCTAGCAGGTGCG
AGTGACATTTTTAATGCTTCTGAAAACACTTTTGGTGCATTGGATAATTCTGATATAACATTTGGCGATGTTCACACTGA
ATCAAGGGAAATTGTACCACTAACTAATGGTTTGTACAGTTTATTATTGGAATCAAAGAATCGAGCTCTGCGACAAGAGG
CTTTTGAAACATTGTATGATAGCTATATAGCCTTACAAAACACATTCGCTTCAACGCTTTCATCACACGTTAAGGGACAT
AACTTTTTAGCTCGAACGCGCCATTACCAATCAGCGCGTGAAGCAGCTATTTTACCACATCAAGTGCCAACAACTGTTTT
TCAAACATTAATTAAGACAGTGGATGAACATTTACCATTATTACATCGTTTTGTATCCTTACGTAAAAAGATTTTAAATG
TTGAAGATGTACATTCTTATGATTTATATGTGCCACTAGTAGATGAAATAGATTTTGAAGTGACATACGAAAAAGCAAAA
GATATTGTTCTGGCAGCGTTAGCGCCATTGGGTGAAGATTATCTAGCCGTTGTTCAAAAAGCTTTTGATGAACGATGGAT
TGATGTTATTGAAAACAAAGGTAAACGGACAGGTGCTTATTCGAGTGGCACATATGATACGAATCCCTTTATTTTATTGA
ATTGGCAAAATAATCTGAATAATGTTTACACATTAGCTCATGAAATGGGTCATTCTATTCATTCTTATCTAACGCGACAT
AATCAACCTTATTACTATGGTGACTATCCAATTTTCTTAGCTGAAATTGCGTCAACAACCAATGAGTCATTACTCACAGA
CTACTTATTGAAAAATAATGATGATCCAAAGTTTCAAGCATATATCCTCAATCAATATTTGGATGGCTTTAAGGGAACGG
TATTTCGTCAAACACAGTTTGCGGAGTTTGAGAATTGGATTCACGAACAAAGTGCTCAGGGTGAAGCTTTAACTGCTGAT
AAAATGAGTACTTATTATGGCAATCTTAATCAGAAGTATTACGGCAATGATCTATTTCCTGATGAAGAAATCGCGTTTGA
ATGGTCGCGCATCCCGCATTTTTATTACAATTTCTATGTTTATCAATATGCCACTGGTGAGGCTGCGGCAACGACTTTAG
CTGAACGTATTCTAAATCAAAATGGTGCAGAAGCTTACAAAAACTATTTGAAAGCCGGTTCATCAGATTATCCTTTGAAT
GTGATTGCGAAAGCAGGTGTTGATATGAGCCAAGCTGATTACTTAAATCAAGCTTTTGATGTATTTGAAGAACGCTTAAA
CCAGTTAGAAATGTTATTAAAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-579)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.108

99.664

0.519