Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HTZ88_RS00555 Genome accession   NZ_CP054418
Coordinates   105069..106436 (+) Length   455 a.a.
NCBI ID   WP_081579526.1    Uniprot ID   -
Organism   Leuconostoc carnosum strain 4010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100069..111436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ88_RS00530 (HTZ88_00535) - 101203..102627 (-) 1425 WP_019040990.1 aspartate ammonia-lyase -
  HTZ88_RS00535 (HTZ88_00540) rpiA 102837..103520 (-) 684 WP_135197997.1 ribose-5-phosphate isomerase RpiA -
  HTZ88_RS00540 (HTZ88_00545) - 103517..103801 (-) 285 WP_135197998.1 GNAT family N-acetyltransferase -
  HTZ88_RS00545 (HTZ88_00550) - 104042..104590 (+) 549 WP_014973635.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  HTZ88_RS00550 (HTZ88_00555) - 104590..105051 (+) 462 WP_014973636.1 NUDIX hydrolase -
  HTZ88_RS00555 (HTZ88_00560) radA 105069..106436 (+) 1368 WP_081579526.1 DNA repair protein RadA Machinery gene
  HTZ88_RS00560 (HTZ88_00565) - 106454..106870 (+) 417 WP_014973638.1 hypothetical protein -
  HTZ88_RS00565 (HTZ88_00570) - 107044..107640 (+) 597 WP_014973639.1 helix-turn-helix domain-containing protein -
  HTZ88_RS00570 (HTZ88_00575) - 107693..108412 (+) 720 WP_014973640.1 SDR family NAD(P)-dependent oxidoreductase -
  HTZ88_RS00575 (HTZ88_00580) - 108522..109343 (+) 822 WP_135198000.1 oxidoreductase -
  HTZ88_RS00580 (HTZ88_00585) - 109477..110088 (-) 612 WP_014973642.1 helix-turn-helix domain-containing protein -
  HTZ88_RS00585 (HTZ88_00590) - 110261..110509 (-) 249 WP_014973643.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49268.42 Da        Isoelectric Point: 5.5592

>NTDB_id=452402 HTZ88_RS00555 WP_081579526.1 105069..106436(+) (radA) [Leuconostoc carnosum strain 4010]
MAKVKTQFICSNCGSVSARYLGRCSNCGQWGTLVEEKLQPETNDRKSRVSLDGRTAKVQKINAITSEETPRVATKLQELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGQLAQEGRVLYVTGEESATQVKLRADRLGVGHDEFYLYPETDMVAIKKQ
IDELQPDFVVIDSVQTMQEPDVTSAIGSVSQIREVTADLLQIAKTNNISVFIVGHVTKDGAIAGPKILEHMVDTVLYFEG
DMHHNYRILRAVKNRFGATNELGIFEMRDGGLREVANPSEIFLEERLDGATGSAVVIALEGSRPILVELQALVTPTVFGN
AQRTATGLDRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAVAVALASSYHDKETRPTDAFIGELGLTGE
VRSVPQIEERLKEASKLGFKRVIAPQNNLNGIEIPDGLRVLGVATLTQALKVAFD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=452402 HTZ88_RS00555 WP_081579526.1 105069..106436(+) (radA) [Leuconostoc carnosum strain 4010]
ATCGCCAAAGTAAAAACACAATTTATTTGTTCAAACTGCGGTTCTGTTTCAGCACGATATCTTGGTCGTTGCTCAAATTG
TGGTCAATGGGGCACGTTAGTTGAGGAAAAACTACAACCAGAAACAAATGATCGCAAGAGCCGCGTCAGTTTAGATGGTC
GCACAGCTAAAGTTCAAAAAATTAACGCAATCACATCTGAAGAAACGCCCCGTGTTGCAACTAAATTACAAGAACTTAAT
CGCGTGTTAGGTGGTGGTGTAGTACCGGGGTCGATGGTGTTAATCGGTGGGGATCCAGGTATTGGTAAATCAACGCTATT
GCTACAAGTTTCTGGGCAATTAGCACAAGAAGGTCGTGTGCTATATGTCACCGGAGAAGAATCAGCAACACAAGTTAAAT
TACGAGCTGATCGTTTAGGAGTAGGTCATGATGAATTTTATCTTTACCCCGAAACAGATATGGTAGCTATAAAAAAGCAG
ATTGATGAATTACAGCCAGATTTTGTAGTGATCGATTCAGTACAAACGATGCAGGAGCCAGATGTTACCTCAGCAATCGG
GTCGGTTTCACAAATTAGAGAAGTGACAGCTGATTTGTTACAAATTGCAAAGACAAATAATATTTCAGTCTTTATTGTTG
GTCATGTCACCAAAGATGGTGCAATTGCAGGACCTAAAATTTTAGAGCATATGGTTGATACCGTGCTTTATTTTGAGGGC
GATATGCATCACAATTATCGTATTTTACGAGCAGTCAAAAATCGTTTTGGTGCAACGAACGAATTAGGTATTTTTGAAAT
GCGGGATGGTGGTTTGCGCGAAGTAGCTAATCCATCTGAGATTTTTTTAGAAGAACGACTAGACGGTGCCACTGGCTCGG
CTGTGGTTATTGCTTTAGAAGGATCACGTCCGATACTTGTTGAATTACAAGCATTAGTGACACCAACTGTTTTTGGTAAT
GCACAACGCACAGCCACTGGATTAGATCGTAATCGTGTCAGTTTAATCATGGCGGTTTTGGAAAAGCGAGCTAACTTATT
ATTGCAAAACCAAGATGCTTATTTAAAAGCTGCTGGTGGCGTTAAGCTAGATGAGCCAGCTATTGATTTAGCTGTTGCCG
TGGCGCTGGCGAGCTCATACCATGATAAAGAAACACGCCCAACAGATGCGTTTATCGGTGAGTTGGGTCTGACTGGTGAA
GTACGCAGCGTGCCACAAATTGAAGAACGGCTGAAAGAAGCAAGCAAATTGGGATTCAAACGGGTTATTGCACCACAAAA
TAATTTGAATGGTATAGAAATACCTGATGGGCTACGAGTGCTCGGAGTTGCCACGCTGACGCAAGCATTGAAAGTTGCTT
TTGACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-220)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

65.198

99.78

0.651
  radA Streptococcus pneumoniae D39

65.198

99.78

0.651
  radA Streptococcus pneumoniae R6

65.198

99.78

0.651
  radA Streptococcus pneumoniae TIGR4

65.198

99.78

0.651
  radA Streptococcus mitis NCTC 12261

65.198

99.78

0.651
  radA Streptococcus mitis SK321

65.198

99.78

0.651
  radA Bacillus subtilis subsp. subtilis str. 168

62.009

100

0.624