Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   HTY60_RS20835 Genome accession   NZ_CP054415
Coordinates   341125..341289 (+) Length   54 a.a.
NCBI ID   WP_269387144.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 205     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 336125..346289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY60_RS20830 srfAB 338016..341108 (+) 3093 Protein_311 surfactin non-ribosomal peptide synthetase SrfAB -
  HTY60_RS20835 comS 341125..341289 (+) 165 WP_269387144.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6236.25 Da        Isoelectric Point: 12.3302

>NTDB_id=452349 HTY60_RS20835 WP_269387144.1 341125..341289(+) (comS) [Bacillus amyloliquefaciens strain 205]
MRARRSSSLNRSDKRLIRSIILFPQHNAGCISSISLGRPARATTSLLYFCWRDR

Nucleotide


Download         Length: 165 bp        

>NTDB_id=452349 HTY60_RS20835 WP_269387144.1 341125..341289(+) (comS) [Bacillus amyloliquefaciens strain 205]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAA
CGCAGGATGTATATCCTCAATCAGCTTGGGCAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAGGGATC
GGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

60.87

85.185

0.519