Detailed information NTG0452344

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: HTY60_RS18895
• Genome accession: NZ_CP054415
• Coordinates: 3654761..3655906 (+)
• Length: 381 a.a.
• NCBI ID: WP_013353955.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain 205
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3649761..3660906

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HTY60_RS18875 (HTY60_18875)	argS	3650425..3652095 (-)	1671	WP_013353950.1	arginine--tRNA ligase	-
HTY60_RS18880 (HTY60_18880)	-	3652092..3652520 (-)	429	WP_013353951.1	DUF1934 domain-containing protein	-
HTY60_RS21075	-	3652674..3653133 (+)	460	Protein_3723	bacteriocin biosynthesis protein AlbG	-
HTY60_RS18890 (HTY60_18890)	-	3653139..3654532 (-)	1394	Protein_3724	YncE family protein	-
HTY60_RS18895 (HTY60_18895)	rapF	3654761..3655906 (+)	1146	WP_013353955.1	tetratricopeptide repeat protein	Regulator
HTY60_RS18900 (HTY60_18900)	phrF	3655890..3656009 (+)	120	WP_014471166.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
HTY60_RS18905 (HTY60_18905)	speB	3656123..3656995 (-)	873	WP_013353956.1	agmatinase	-
HTY60_RS18910 (HTY60_18910)	speE	3657054..3657884 (-)	831	WP_013353957.1	spermidine synthase	-
HTY60_RS18915 (HTY60_18915)	-	3658084..3660156 (+)	2073	WP_013353958.1	transglycosylase domain-containing protein	-
HTY60_RS18920 (HTY60_18920)	-	3660181..3660612 (-)	432	WP_013353959.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45480.54 Da
• Isoelectric Point: 4.6393

>NTDB_id=452344 HTY60_RS18895 WP_013353955.1 3654761..3655906(+) (rapF) [Bacillus amyloliquefaciens strain 205]
MASVVSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELASLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVTDQIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAKEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLKDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=452344 HTY60_RS18895 WP_013353955.1 3654761..3655906(+) (rapF) [Bacillus amyloliquefaciens strain 205]
GTGGCGAGTGTTGTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAAGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTGGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGCCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAATTGACGTACG
TTACAGATCAGATAGAAAAAGCGGAATTTTACTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGGCTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATCAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTTCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGGCAATATCATGACAAAGGAGTATCTTACGCGAAGG
AGGCGGAAGATTCATTATATATAGCGGAGTATGAATTTTTAGAATCTTTGTACGTCGGTGAGCCTGATGAAGAAGCAATT
ATGGAATGTTTTGACTTCCTCAAGGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
CCACGAGAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAAGTGGAAGAAACAAGACAGCAAATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	78.215	100	0.782
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	99.738	0.567