Detailed information NTG0452318

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JBL37_RS01120
• Genome accession: NZ_CP065948
• Coordinates: 236941..237945 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PAM68
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 231941..242945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JBL37_RS01090 (JBL37_01090)	fghA	232033..232884 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
JBL37_RS01095 (JBL37_01095)	ispF	232955..233428 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JBL37_RS01100 (JBL37_01100)	truD	233425..234492 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
JBL37_RS01105 (JBL37_01105)	surE	234480..235229 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
JBL37_RS01110 (JBL37_01110)	-	235262..235897 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JBL37_RS01115 (JBL37_01115)	-	235943..236836 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
JBL37_RS01120 (JBL37_01120)	rpoS	236941..237945 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
JBL37_RS01125 (JBL37_01125)	fdxA	238371..238694 (-)	324	WP_003092272.1	ferredoxin FdxA	-
JBL37_RS01130 (JBL37_01130)	mutS	238761..241328 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
JBL37_RS01135 (JBL37_01135)	-	241454..242461 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=452318 JBL37_RS01120 WP_003113871.1 236941..237945(+) (rpoS) [Pseudomonas aeruginosa strain PAM68]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=452318 JBL37_RS01120 WP_003113871.1 236941..237945(+) (rpoS) [Pseudomonas aeruginosa strain PAM68]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCTGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGATGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653