Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HTY60_RS09105 Genome accession   NZ_CP054415
Coordinates   1708646..1709545 (+) Length   299 a.a.
NCBI ID   WP_013352246.1    Uniprot ID   A0A9P1JH57
Organism   Bacillus amyloliquefaciens strain 205     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1703646..1714545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY60_RS09085 (HTY60_09085) - 1704336..1706039 (+) 1704 WP_013352242.1 hypothetical protein -
  HTY60_RS09090 (HTY60_09090) - 1706036..1706317 (+) 282 WP_013352243.1 FlhB-like flagellar biosynthesis protein -
  HTY60_RS09095 (HTY60_09095) sucC 1706492..1707649 (+) 1158 WP_013352244.1 ADP-forming succinate--CoA ligase subunit beta -
  HTY60_RS09100 (HTY60_09100) sucD 1707678..1708580 (+) 903 WP_013352245.1 succinate--CoA ligase subunit alpha -
  HTY60_RS09105 (HTY60_09105) dprA 1708646..1709545 (+) 900 WP_013352246.1 DNA-processing protein DprA Machinery gene
  HTY60_RS09110 (HTY60_09110) topA 1709727..1711802 (+) 2076 WP_013352247.1 type I DNA topoisomerase -
  HTY60_RS09115 (HTY60_09115) trmFO 1711867..1713174 (+) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HTY60_RS09120 (HTY60_09120) xerC 1713244..1714161 (+) 918 WP_013352249.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32875.04 Da        Isoelectric Point: 9.4258

>NTDB_id=452305 HTY60_RS09105 WP_013352246.1 1708646..1709545(+) (dprA) [Bacillus amyloliquefaciens strain 205]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLRDPHPLTVLSEGKTAPKAIFREIERKEPELDKVLSDYRREGSTVI
PISSSRYPSWLKTIYDPPAVLFAKGHTSLLEKGRKIGIVGTRKPTEDGIKAVGHLTAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARGVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=452305 HTY60_RS09105 WP_013352246.1 1708646..1709545(+) (dprA) [Bacillus amyloliquefaciens strain 205]
TTGGATCAAGCGTCGCGCTGTTTAATGGTCTGCAGTATCAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACGAGATCCGCATCCATTAACTGTTTTGTCAGAAGGGAAAACAGCTCCGAAAGCAA
TTTTTCGAGAAATAGAGCGCAAGGAACCGGAACTTGATAAAGTTCTGTCCGATTACCGCCGAGAAGGCAGTACTGTCATC
CCGATTTCATCAAGCCGCTATCCTTCATGGCTTAAAACAATTTATGATCCGCCGGCTGTCTTGTTTGCAAAAGGGCATAC
GTCACTTCTTGAAAAAGGCAGAAAAATAGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTACCGCTGAACTCTCAAAAAAAGGCTGGGTCATAGTAAGCGGGCTGGCATCCGGCATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTAATAGCCGGCGGATTCCATCATATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATATATGGCTGAACATCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAGTGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGATTAAGTGAAGGAATTGTAGTTGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACGGCTTATCAAGCCCTTGATCAAGGGAGAGAGGTATTTGCCGTTCCCGGTTCCATTTTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCGGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGAGGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

71.237

100

0.712
  dprA Lactococcus lactis subsp. cremoris KW2

41.935

93.311

0.391