Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HTY60_RS01735 Genome accession   NZ_CP054415
Coordinates   324079..324516 (-) Length   145 a.a.
NCBI ID   WP_013350968.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 205     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 319079..329516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY60_RS01710 (HTY60_01710) - 320096..321232 (+) 1137 WP_151282481.1 zinc-dependent alcohol dehydrogenase -
  HTY60_RS01715 (HTY60_01715) - 321247..321681 (+) 435 WP_013350964.1 RDD family protein -
  HTY60_RS01720 (HTY60_01720) - 321755..322078 (+) 324 WP_013350965.1 YckD family protein -
  HTY60_RS01725 (HTY60_01725) - 322183..323619 (+) 1437 WP_174201880.1 glycoside hydrolase family 1 protein -
  HTY60_RS01730 (HTY60_01730) nin/comJ 323660..324058 (-) 399 WP_013350967.1 competence protein ComJ Regulator
  HTY60_RS01735 (HTY60_01735) nucA/comI 324079..324516 (-) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  HTY60_RS01740 (HTY60_01740) hxlB 324867..325424 (-) 558 WP_013350969.1 6-phospho-3-hexuloisomerase -
  HTY60_RS01745 (HTY60_01745) hxlA 325421..326056 (-) 636 WP_013350970.1 3-hexulose-6-phosphate synthase -
  HTY60_RS01750 (HTY60_01750) - 326288..326650 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=452283 HTY60_RS01735 WP_013350968.1 324079..324516(-) (nucA/comI) [Bacillus amyloliquefaciens strain 205]
MKTLKALLLVLIIIAGAVAALIKGDIFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=452283 HTY60_RS01735 WP_013350968.1 324079..324516(-) (nucA/comI) [Bacillus amyloliquefaciens strain 205]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATATTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAACAATCTCTTAAACATGTGCCTGTAAAAACAGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCAGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641