Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   JBL36_RS09535 Genome accession   NZ_CP065947
Coordinates   2022229..2023254 (-) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain PAS6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2017229..2028254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JBL36_RS09510 (JBL36_09510) aroE 2017431..2018255 (-) 825 WP_003111201.1 shikimate dehydrogenase -
  JBL36_RS09515 (JBL36_09515) hemF 2018313..2019230 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  JBL36_RS09520 (JBL36_09520) - 2019421..2020398 (+) 978 WP_003111202.1 NADPH:quinone reductase -
  JBL36_RS09525 (JBL36_09525) - 2020408..2020965 (-) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  JBL36_RS09530 (JBL36_09530) dprA 2021006..2022094 (-) 1089 WP_016264002.1 DNA-processing protein DprA Machinery gene
  JBL36_RS09535 (JBL36_09535) tsaP 2022229..2023254 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  JBL36_RS09540 (JBL36_09540) def 2023393..2023899 (+) 507 WP_003107059.1 peptide deformylase -
  JBL36_RS09545 (JBL36_09545) fmt 2023954..2024898 (+) 945 WP_017001989.1 methionyl-tRNA formyltransferase -
  JBL36_RS09550 (JBL36_09550) rsmB 2024895..2026199 (+) 1305 WP_003161949.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  JBL36_RS09555 (JBL36_09555) trkA 2026227..2027600 (+) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  JBL36_RS09560 (JBL36_09560) - 2027749..2028066 (+) 318 WP_003120685.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=452242 JBL36_RS09535 WP_003097294.1 2022229..2023254(-) (tsaP) [Pseudomonas aeruginosa strain PAS6]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=452242 JBL36_RS09535 WP_003097294.1 2022229..2023254(-) (tsaP) [Pseudomonas aeruginosa strain PAS6]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393