Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   JBL36_RS07560 Genome accession   NZ_CP065947
Coordinates   1602359..1602724 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PAS6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1597359..1607724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JBL36_RS07545 (JBL36_07545) pilK 1598703..1599578 (-) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -
  JBL36_RS07550 (JBL36_07550) pilJ 1599639..1601687 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  JBL36_RS07555 (JBL36_07555) - 1601772..1602308 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  JBL36_RS07560 (JBL36_07560) pilH 1602359..1602724 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  JBL36_RS07565 (JBL36_07565) pilG 1602771..1603178 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  JBL36_RS07570 (JBL36_07570) gshB 1603433..1604386 (+) 954 WP_003162014.1 glutathione synthase -
  JBL36_RS07575 (JBL36_07575) - 1604533..1605426 (+) 894 WP_003162015.1 energy transducer TonB -
  JBL36_RS07580 (JBL36_07580) - 1605475..1606044 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  JBL36_RS07585 (JBL36_07585) ruvX 1606044..1606478 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  JBL36_RS07590 (JBL36_07590) pyrR 1606590..1607102 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=452235 JBL36_RS07560 WP_003084587.1 1602359..1602724(-) (pilH) [Pseudomonas aeruginosa strain PAS6]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=452235 JBL36_RS07560 WP_003084587.1 1602359..1602724(-) (pilH) [Pseudomonas aeruginosa strain PAS6]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364