Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LL3_RS01630 Genome accession   NC_017190
Coordinates   311762..312199 (-) Length   145 a.a.
NCBI ID   WP_013350968.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LL3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 306762..317199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL3_RS01605 (LL3_00311) - 307779..308915 (+) 1137 WP_041915596.1 zinc-dependent alcohol dehydrogenase -
  LL3_RS01610 (LL3_00312) - 308930..309364 (+) 435 WP_013350964.1 RDD family protein -
  LL3_RS01615 (LL3_00313) - 309438..309761 (+) 324 WP_013350965.1 YckD family protein -
  LL3_RS01620 (LL3_00314) - 309866..311302 (+) 1437 WP_013350966.1 glycoside hydrolase family 1 protein -
  LL3_RS01625 (LL3_00315) nin/comJ 311343..311741 (-) 399 WP_013350967.1 competence protein ComJ Regulator
  LL3_RS01630 (LL3_00316) nucA/comI 311762..312199 (-) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LL3_RS01635 (LL3_00317) hxlB 312550..313107 (-) 558 WP_013350969.1 6-phospho-3-hexuloisomerase -
  LL3_RS01640 (LL3_00318) hxlA 313104..313739 (-) 636 WP_013350970.1 3-hexulose-6-phosphate synthase -
  LL3_RS01645 (LL3_00319) - 313971..314333 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=45223 LL3_RS01630 WP_013350968.1 311762..312199(-) (nucA/comI) [Bacillus amyloliquefaciens LL3]
MKTLKALLLVLIIIAGAVAALIKGDIFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=45223 LL3_RS01630 WP_013350968.1 311762..312199(-) (nucA/comI) [Bacillus amyloliquefaciens LL3]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATATTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAACAATCTCTTAAACATGTGCCTGTAAAAACAGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCAGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment