Detailed information NTG0452223

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JBL36_RS02660
• Genome accession: NZ_CP065947
• Coordinates: 565815..566819 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PAS6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 560815..571819

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JBL36_RS02645 (JBL36_02645)	-	561299..562306 (+)	1008	WP_003098486.1	TolB family protein	-
JBL36_RS02650 (JBL36_02650)	mutS	562432..564999 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
JBL36_RS02655 (JBL36_02655)	fdxA	565066..565389 (+)	324	WP_003092272.1	ferredoxin FdxA	-
JBL36_RS02660 (JBL36_02660)	rpoS	565815..566819 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
JBL36_RS02665 (JBL36_02665)	-	566924..567817 (-)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
JBL36_RS02670 (JBL36_02670)	-	567863..568498 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JBL36_RS02675 (JBL36_02675)	surE	568531..569280 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
JBL36_RS02680 (JBL36_02680)	truD	569268..570335 (-)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
JBL36_RS02685 (JBL36_02685)	ispF	570332..570805 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JBL36_RS02690 (JBL36_02690)	fghA	570876..571727 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=452223 JBL36_RS02660 WP_003113871.1 565815..566819(-) (rpoS) [Pseudomonas aeruginosa strain PAS6]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=452223 JBL36_RS02660 WP_003113871.1 565815..566819(-) (rpoS) [Pseudomonas aeruginosa strain PAS6]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCTGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGATGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653