Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   JAV55_RS18430 Genome accession   NZ_CP065943
Coordinates   3557466..3560339 (-) Length   957 a.a.
NCBI ID   WP_003185648.1    Uniprot ID   Q65ED9
Organism   Bacillus licheniformis strain H2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3552466..3565339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS18400 (JAV55_18400) - 3554494..3554853 (-) 360 WP_003185632.1 phage holin family protein -
  JAV55_RS18405 (JAV55_18405) - 3554850..3555050 (-) 201 WP_003185633.1 PspC domain-containing protein -
  JAV55_RS18410 (JAV55_18410) - 3555055..3556149 (-) 1095 WP_003185635.1 DUF4097 domain-containing protein -
  JAV55_RS18415 (JAV55_18415) - 3556175..3556501 (-) 327 WP_003185637.1 DUF4870 domain-containing protein -
  JAV55_RS18420 (JAV55_18420) - 3556716..3556946 (+) 231 WP_003185639.1 hypothetical protein -
  JAV55_RS22055 - 3556953..3557322 (-) 370 Protein_3618 VOC family protein -
  JAV55_RS18430 (JAV55_18430) uvrA 3557466..3560339 (-) 2874 WP_003185648.1 excinuclease ABC subunit UvrA Machinery gene
  JAV55_RS18435 (JAV55_18435) uvrB 3560347..3562332 (-) 1986 WP_003185651.1 excinuclease ABC subunit UvrB Machinery gene
  JAV55_RS18440 (JAV55_18440) - 3562516..3562749 (-) 234 WP_003185654.1 CsbA family protein -
  JAV55_RS18445 (JAV55_18445) - 3562868..3563161 (-) 294 WP_003185656.1 DUF5316 domain-containing protein -
  JAV55_RS18450 (JAV55_18450) - 3563286..3564497 (-) 1212 WP_026699240.1 PDZ domain-containing protein -
  JAV55_RS18455 (JAV55_18455) swrA 3564795..3565148 (-) 354 WP_003185659.1 swarming motility protein SwrAA -

Sequence

Protein


Download         Length: 957 a.a.        Molecular weight: 106775.12 Da        Isoelectric Point: 6.5877

>NTDB_id=452196 JAV55_RS18430 WP_003185648.1 3557466..3560339(-) (uvrA) [Bacillus licheniformis strain H2]
MATKRIEVKGARAHNLKNIDVSIPRDQLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDAIEG
LSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGKPVCPVHGIEITSQTIEQMTDRILDYPERTKIQVLAPIVSGR
KGSHVKVLEQIRKQGYVRVRIDGEMNDLSEDIELEKNKKHSIEVVVDRIVIKEGVTARLTDSLETALRLGEGRVIIDVIG
QEELLFSEHHACPHCGFSIGELEPRMFSFNSPFGACPSCDGLGSKLEVDVELVIPNDELSLKENAIAPWEPQSSQYYPKL
LEAVCSHYGIDMDIPVRDLPKHHLEKILYGSGGEQIYFRYENDFGQVRENYIEFEGVIRNIERRYKETSSDYVRELMEKY
MANQPCPSCKGYRLKKESLAVLINGLHIGKITEMSVANALQFFRELDLSEKDMKIANLILREIEERLGFLNNVGLDYLTL
SRAAGTLSGGEAQRIRLATQIGSRLTGVLYILDEPSIGLHQRDNDRLIETLKNMRDIGNTLIVVEHDEDTMLAADYLIDI
GPGAGVHGGEVISAGTPEEVMNDDQSLTGQYLSGKKFIPLPAERRKPDNRFIEVKGAKENNLKNVSVKFPLGVFTAVTGV
SGSGKSTLVNEILHKTLAQKLHRAKTKPGEYKEIKGIEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAK
VRGYKKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLQVTYKGKNISDVLEMTVENAVQFFEN
IPKIKRKLQTLYDVGLGYITLGQPATTLSGGEAQRVKLASELHRRSTGRSLYILDEPTTGLHVDDIARLLAVLQRLVDNG
DTVLVIEHNLDIIKAADYLIDLGPEGGDGGGMIVAAGPPEEVVKVEGSYTGRYLKPIIERDKNRMKKRLQEKEAVRP

Nucleotide


Download         Length: 2874 bp        

>NTDB_id=452196 JAV55_RS18430 WP_003185648.1 3557466..3560339(-) (uvrA) [Bacillus licheniformis strain H2]
ATGGCAACGAAACGAATTGAGGTGAAAGGTGCAAGGGCCCATAACCTGAAAAATATCGATGTCTCTATTCCGAGGGATCA
GCTTGTCGTTTTGACAGGTCTTTCGGGATCAGGGAAATCATCCCTTGCGTTCGATACGATATATGCAGAGGGGCAGCGGC
GCTATGTCGAGTCTCTCTCCGCATATGCCCGCCAGTTTTTAGGACAGATGGACAAACCCGACGTCGATGCGATTGAAGGC
CTGTCGCCGGCGATCAGCATCGATCAGAAAACAACGAGCCGGAACCCCCGGTCGACAGTCGGAACGGTGACGGAAATCTA
CGATTATCTCCGGCTGCTGTTTGCCAGAATCGGAAAGCCGGTTTGCCCTGTTCACGGCATTGAAATTACCTCGCAAACGA
TCGAACAGATGACGGACAGAATTTTGGATTATCCCGAGCGGACGAAGATCCAGGTGCTTGCGCCGATCGTCTCGGGAAGA
AAAGGATCGCACGTGAAAGTGCTCGAACAAATCAGAAAACAAGGCTATGTGAGAGTCCGGATCGACGGCGAAATGAACGA
CCTCTCAGAGGACATCGAGCTCGAAAAGAATAAAAAGCATTCGATCGAAGTCGTCGTCGACCGCATCGTCATAAAAGAAG
GCGTAACCGCCCGTCTCACAGACTCGCTCGAAACGGCGCTCCGCCTCGGCGAAGGCCGTGTGATCATCGACGTGATCGGG
CAGGAAGAGCTGCTGTTCAGCGAGCACCATGCCTGTCCGCACTGCGGTTTTTCAATTGGGGAACTGGAGCCGAGGATGTT
TTCTTTCAACAGCCCGTTCGGCGCATGTCCGAGCTGCGACGGCCTCGGGTCCAAGCTGGAAGTCGATGTAGAGCTCGTCA
TTCCAAACGATGAGCTGTCTCTAAAGGAGAATGCGATTGCACCTTGGGAACCGCAGAGCTCCCAATATTATCCGAAGCTG
CTTGAAGCGGTATGCAGCCACTATGGAATCGATATGGATATTCCGGTCAGAGACCTGCCGAAGCACCACCTTGAGAAAAT
CCTCTACGGCAGCGGAGGCGAGCAGATTTATTTCAGATATGAAAACGACTTCGGACAAGTCCGGGAAAACTACATTGAGT
TCGAAGGCGTCATCCGCAATATCGAAAGGCGCTATAAAGAAACCAGCTCGGATTATGTTCGTGAACTGATGGAAAAATAT
ATGGCTAATCAGCCGTGCCCTTCATGCAAAGGCTACCGTCTGAAAAAGGAATCCCTCGCCGTGCTGATTAACGGCCTTCA
CATCGGTAAGATAACCGAAATGTCGGTAGCTAACGCCCTTCAATTTTTCCGTGAACTTGATCTTTCGGAAAAAGACATGA
AGATCGCCAACCTCATTTTGCGGGAGATTGAAGAAAGGCTCGGATTCTTGAACAATGTCGGGCTTGACTATTTGACGCTC
AGCCGCGCAGCCGGCACTCTGTCGGGGGGAGAAGCGCAGCGGATCAGGCTTGCAACGCAAATCGGCTCAAGGCTGACCGG
TGTCCTTTACATCCTTGATGAGCCGTCAATCGGTCTTCATCAACGCGATAACGACCGCCTGATTGAGACGCTCAAAAACA
TGAGGGATATCGGAAACACATTGATCGTCGTCGAGCATGACGAGGATACAATGCTTGCCGCCGATTATTTAATCGATATC
GGGCCCGGCGCGGGTGTACACGGGGGAGAAGTAATCTCCGCCGGAACGCCGGAAGAAGTGATGAACGATGATCAATCTCT
GACAGGGCAATATCTTTCAGGGAAAAAATTCATTCCTCTTCCTGCCGAGAGAAGAAAGCCTGACAACCGCTTTATCGAGG
TAAAAGGGGCAAAGGAAAACAACTTGAAAAATGTTTCCGTGAAATTTCCGCTCGGCGTGTTCACAGCTGTTACCGGGGTA
TCGGGATCAGGGAAAAGCACGCTCGTTAATGAAATTCTCCACAAAACGCTGGCTCAGAAGCTGCATCGGGCTAAGACGAA
ACCGGGAGAATACAAAGAAATAAAAGGAATCGAGCACCTCGATAAAGTGATCGATATTGACCAGTCTCCGATCGGCCGGA
CGCCGAGGTCAAATCCGGCCACATATACCGGCGTGTTCGATGACATCCGCGACGTGTTTGCCCAGACGAATGAAGCGAAA
GTCAGAGGATACAAGAAAGGGCGCTTCAGCTTTAACGTCAAAGGCGGACGCTGTGAGGCCTGCAAAGGCGACGGAATCAT
TAAAATCGAGATGCACTTCCTGCCCGATGTATACGTTCCTTGTGAGGTTTGCCACGGAAAGAGATACAACCGTGAAACGC
TTCAGGTTACGTACAAAGGCAAAAATATCTCTGACGTGCTTGAGATGACGGTCGAGAATGCCGTTCAATTTTTTGAGAAC
ATCCCGAAAATCAAGCGCAAGCTGCAGACCCTCTATGATGTCGGTCTTGGCTATATTACGCTCGGACAGCCGGCTACAAC
GCTTTCCGGGGGAGAAGCGCAGCGGGTCAAATTGGCATCTGAACTTCACCGCCGTTCAACGGGAAGATCCCTTTATATTT
TGGACGAGCCGACGACAGGACTGCACGTCGATGATATCGCAAGGCTTTTGGCCGTTCTGCAGCGCCTGGTCGACAATGGA
GATACAGTGCTTGTAATCGAACACAATCTAGATATTATAAAAGCGGCTGATTATTTGATCGACTTGGGTCCTGAAGGCGG
AGACGGCGGGGGAATGATCGTGGCTGCCGGACCTCCCGAAGAAGTCGTGAAAGTCGAAGGGTCATATACCGGCCGTTATT
TAAAACCGATCATTGAACGCGACAAAAACAGAATGAAGAAGCGGCTTCAAGAAAAAGAAGCTGTCAGACCGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

ABC transporter (ABC_tran)

(622-858)

UvrA DNA-binding domain (UvrA_DNA-bind)

(289-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65ED9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

69.165

97.597

0.675
  uvrA Streptococcus pneumoniae TIGR4

69.165

97.597

0.675
  uvrA Streptococcus pneumoniae D39

69.165

97.597

0.675