Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | LL3_RS00515 | Genome accession | NC_017190 |
| Coordinates | 98691..101126 (+) | Length | 811 a.a. |
| NCBI ID | WP_013350791.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens LL3 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 93691..106126
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL3_RS00500 (LL3_00085) | ctsR | 96568..97032 (+) | 465 | WP_003156396.1 | transcriptional regulator CtsR | - |
| LL3_RS00505 (LL3_00086) | - | 97046..97603 (+) | 558 | WP_013350789.1 | UvrB/UvrC motif-containing protein | - |
| LL3_RS00510 (LL3_00087) | - | 97603..98694 (+) | 1092 | WP_013350790.1 | protein arginine kinase | - |
| LL3_RS00515 (LL3_00088) | clpC | 98691..101126 (+) | 2436 | WP_013350791.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| LL3_RS00520 (LL3_00089) | radA | 101220..102599 (+) | 1380 | WP_013350792.1 | DNA repair protein RadA | Machinery gene |
| LL3_RS00525 (LL3_00090) | disA | 102603..103685 (+) | 1083 | WP_014469611.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| LL3_RS00530 (LL3_00091) | - | 103799..104899 (+) | 1101 | WP_013350794.1 | PIN/TRAM domain-containing protein | - |
| LL3_RS00535 (LL3_00092) | ispD | 104913..105611 (+) | 699 | WP_038463178.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| LL3_RS00540 (LL3_00093) | ispF | 105604..106080 (+) | 477 | WP_013350796.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90178.61 Da Isoelectric Point: 5.7566
>NTDB_id=45219 LL3_RS00515 WP_013350791.1 98691..101126(+) (clpC) [Bacillus amyloliquefaciens LL3]
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGTSGAGTNSSAN
TPTLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDEPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTEAAKAKVADEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGTSGAGTNSSAN
TPTLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDEPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTEAAKAKVADEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN
Nucleotide
Download Length: 2436 bp
>NTDB_id=45219 LL3_RS00515 WP_013350791.1 98691..101126(+) (clpC) [Bacillus amyloliquefaciens LL3]
ATGATGTTTGGAAGATTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATATTATTGGGGTTAGTCCGTGAAGGTGAAGGGATAGCATTTAAAGCCTTAGAAGCGCTGG
GCCTCAATTCAGATAAAATGCAAAAAGAAGTGGAAAGTTTGATTGGCCGAGGACAGGAAAGCACCACATCTGTCCCTCAT
TACACGCCTCGAGCAAAAAAGGTAATAGAACTCTCAATGGATGAAGCCAGAAAGCTGGGACATTCTTATGTAGGAACAGA
ACACATACTTCTCGGGCTGATTCGTGAAGGTGAGGGAGTCGCCGCGAGAGTTCTGAATAATCTGGGTGTCAGTCTCAATA
AGGCGAGACAGCAGGTTCTTCAGCTTCTCGGAAGCAATGAAACAGGGACATCTGGAGCCGGAACAAATAGCAGCGCAAAC
ACTCCGACGCTTGACAGTCTGGCGCGTGATTTAACCGCGATTGCGAGGGAAGACAGCCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACAAAGAATAACCCCGTTCTTATTGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCCGAAGGCCTCGCACAGCAGATCATCAACAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACGTTAGATATGGGGACGGTTGTAGCCGGCACGAAATACCGCGGAGAATTTGAAGACCGCTTGAAAAAGGTAATGGA
TGAAATACGTCAGGCCGGCAATATCATTTTATTCATTGATGAACTGCACACACTGATCGGAGCGGGAGGAGCAGAAGGTG
CGATTGACGCGTCGAATATTTTAAAACCTTCATTGGCGCGCGGAGAGCTTCAGTGCATCGGTGCGACAACGCTTGATGAA
TACCGCAAATATATCGAAAAAGACGCAGCCCTGGAGCGCCGTTTCCAGCCGATTCAGGTGGATGAGCCGTCAGTCGATGA
AAGCATTCAAATTTTAAAAGGACTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACTGATGAAGCGATCGAAG
CGGCAGTTAAATTGTCCGACCGTTATATATCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGACGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAGCTTGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAAAGCCAGGAATTTGAAAAAGCGGCTTCTCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGATACGAAAAAAACGTGGAAAGAAAAACAAGGCCAAGAGAACTCCGAAGTTTCTGTAGAGGATATCGCGATGGTT
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCGCAAACGGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCACTCTCGTGTCATTGGCCAGGATGAAGCCGTTGTAGCCGTTGCAAAGGCTGTGAGACGTGCAAGAGCCGGTCTGAAGG
ATCCGAAACGTCCGATTGGTTCATTCATCTTCTTAGGTCCTACAGGCGTAGGGAAGACAGAGCTGGCAAGAGCACTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACATTCGACTTCACGCCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATTCTCTTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTTGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTCGGCTTCAATGTTCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTGATGGGAGAGC
TGAAGCGTGCCTTCAGGCCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGACCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATAGAGCTGACAGAAGC
TGCAAAAGCAAAAGTAGCAGACGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATCCAAAAGCATG
TGGAGGACCGTTTATCAGAAGAGCTCCTCAGAGGCAATATTGATAAAGGGCAGCACATCGTTCTTGATGTAGAGGACGGC
GAATTTGTCGTAAAAACGACTGCTAAAACGAACTAA
ATGATGTTTGGAAGATTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATATTATTGGGGTTAGTCCGTGAAGGTGAAGGGATAGCATTTAAAGCCTTAGAAGCGCTGG
GCCTCAATTCAGATAAAATGCAAAAAGAAGTGGAAAGTTTGATTGGCCGAGGACAGGAAAGCACCACATCTGTCCCTCAT
TACACGCCTCGAGCAAAAAAGGTAATAGAACTCTCAATGGATGAAGCCAGAAAGCTGGGACATTCTTATGTAGGAACAGA
ACACATACTTCTCGGGCTGATTCGTGAAGGTGAGGGAGTCGCCGCGAGAGTTCTGAATAATCTGGGTGTCAGTCTCAATA
AGGCGAGACAGCAGGTTCTTCAGCTTCTCGGAAGCAATGAAACAGGGACATCTGGAGCCGGAACAAATAGCAGCGCAAAC
ACTCCGACGCTTGACAGTCTGGCGCGTGATTTAACCGCGATTGCGAGGGAAGACAGCCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACAAAGAATAACCCCGTTCTTATTGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCCGAAGGCCTCGCACAGCAGATCATCAACAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACGTTAGATATGGGGACGGTTGTAGCCGGCACGAAATACCGCGGAGAATTTGAAGACCGCTTGAAAAAGGTAATGGA
TGAAATACGTCAGGCCGGCAATATCATTTTATTCATTGATGAACTGCACACACTGATCGGAGCGGGAGGAGCAGAAGGTG
CGATTGACGCGTCGAATATTTTAAAACCTTCATTGGCGCGCGGAGAGCTTCAGTGCATCGGTGCGACAACGCTTGATGAA
TACCGCAAATATATCGAAAAAGACGCAGCCCTGGAGCGCCGTTTCCAGCCGATTCAGGTGGATGAGCCGTCAGTCGATGA
AAGCATTCAAATTTTAAAAGGACTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACTGATGAAGCGATCGAAG
CGGCAGTTAAATTGTCCGACCGTTATATATCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGACGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAGCTTGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAAAGCCAGGAATTTGAAAAAGCGGCTTCTCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGATACGAAAAAAACGTGGAAAGAAAAACAAGGCCAAGAGAACTCCGAAGTTTCTGTAGAGGATATCGCGATGGTT
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCGCAAACGGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCACTCTCGTGTCATTGGCCAGGATGAAGCCGTTGTAGCCGTTGCAAAGGCTGTGAGACGTGCAAGAGCCGGTCTGAAGG
ATCCGAAACGTCCGATTGGTTCATTCATCTTCTTAGGTCCTACAGGCGTAGGGAAGACAGAGCTGGCAAGAGCACTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACATTCGACTTCACGCCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATTCTCTTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTTGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTCGGCTTCAATGTTCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTGATGGGAGAGC
TGAAGCGTGCCTTCAGGCCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGACCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATAGAGCTGACAGAAGC
TGCAAAAGCAAAAGTAGCAGACGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATCCAAAAGCATG
TGGAGGACCGTTTATCAGAAGAGCTCCTCAGAGGCAATATTGATAAAGGGCAGCACATCGTTCTTGATGTAGAGGACGGC
GAATTTGTCGTAAAAACGACTGCTAAAACGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
96.301 |
100 |
0.963 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.689 |
99.014 |
0.492 |
| clpC | Streptococcus thermophilus LMD-9 |
46.481 |
100 |
0.472 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.238 |
100 |
0.47 |
| clpC | Streptococcus mutans UA159 |
44.632 |
100 |
0.456 |
| clpC | Streptococcus pneumoniae D39 |
45.264 |
100 |
0.454 |
| clpC | Streptococcus pneumoniae Rx1 |
45.264 |
100 |
0.454 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.141 |
100 |
0.453 |
| clpE | Streptococcus mutans UA159 |
53.775 |
80.025 |
0.43 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.417 |
81.628 |
0.428 |
| clpE | Streptococcus pneumoniae Rx1 |
52.417 |
81.628 |
0.428 |
| clpE | Streptococcus pneumoniae D39 |
52.417 |
81.628 |
0.428 |
| clpE | Streptococcus pneumoniae R6 |
52.417 |
81.628 |
0.428 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
50.291 |
84.834 |
0.427 |