Detailed information NTG0452160

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: JAV55_RS12965
• Genome accession: NZ_CP065943
• Coordinates: 2529790..2530227 (-)
• Length: 145 a.a.
• NCBI ID: WP_009327905.1
• Uniprot ID: Q8VQ70
• Organism: Bacillus licheniformis strain H2
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2524790..2535227

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JAV55_RS12915 (JAV55_12915)	sinI	2524965..2525141 (+)	177	WP_003183444.1	anti-repressor SinI	Regulator
JAV55_RS12920 (JAV55_12920)	sinR	2525175..2525510 (+)	336	WP_025804940.1	transcriptional regulator SinR	Regulator
JAV55_RS12925 (JAV55_12925)	tasA	2525615..2526409 (-)	795	WP_003183447.1	biofilm matrix protein TasA	-
JAV55_RS12930 (JAV55_12930)	sipW	2526483..2527067 (-)	585	WP_003183449.1	signal peptidase I SipW	-
JAV55_RS12935 (JAV55_12935)	tapA	2527064..2527792 (-)	729	WP_003183451.1	amyloid fiber anchoring/assembly protein TapA	-
JAV55_RS12940 (JAV55_12940)	-	2528069..2528389 (+)	321	WP_003183454.1	YqzG/YhdC family protein	-
JAV55_RS12945 (JAV55_12945)	-	2528413..2528595 (-)	183	WP_003183456.1	YqzE family protein	-
JAV55_RS12950 (JAV55_12950)	comGG	2528684..2529049 (-)	366	WP_003183459.1	competence type IV pilus minor pilin ComGG	-
JAV55_RS12955 (JAV55_12955)	comGF	2529062..2529550 (-)	489	WP_011201694.1	competence type IV pilus minor pilin ComGF	-
JAV55_RS12960 (JAV55_12960)	comGE	2529459..2529806 (-)	348	WP_009327907.1	competence type IV pilus minor pilin ComGE	-
JAV55_RS12965 (JAV55_12965)	comGD	2529790..2530227 (-)	438	WP_009327905.1	competence type IV pilus minor pilin ComGD	Machinery gene
JAV55_RS12970 (JAV55_12970)	comGC	2530233..2530526 (-)	294	WP_003183466.1	competence type IV pilus major pilin ComGC	Machinery gene
JAV55_RS12975 (JAV55_12975)	comGB	2530540..2531574 (-)	1035	WP_011198115.1	competence type IV pilus assembly protein ComGB	Machinery gene
JAV55_RS12980 (JAV55_12980)	comGA	2531564..2532628 (-)	1065	WP_003183477.1	competence type IV pilus ATPase ComGA	Machinery gene
JAV55_RS12985 (JAV55_12985)	-	2532785..2533624 (-)	840	WP_003183480.1	STAS domain-containing protein	-
JAV55_RS12995 (JAV55_12995)	-	2533866..2534243 (-)	378	WP_003183482.1	Spx/MgsR family RNA polymerase-binding regulatory protein	-
JAV55_RS13000 (JAV55_13000)	-	2534452..2534697 (+)	246	WP_003183483.1	DUF2626 domain-containing protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16249.07 Da
• Isoelectric Point: 9.6739

>NTDB_id=452160 JAV55_RS12965 WP_009327905.1 2529790..2530227(-) (comGD) [Bacillus licheniformis strain H2]
MNQKGFTLLESLTVLMIGSIMFSLLFALLPPIYEKRIVQHFVSQLEEDLLYAQQTALVRHTTVKVQFDFAGCRYIMKHSD
EGSSPELVRTYSCNIAIKKSTLKPILTFNPSGVPNQGGKIVIDTQHASFILTIYLGSGKINVQKK

Nucleotide

• Length: 438 bp

>NTDB_id=452160 JAV55_RS12965 WP_009327905.1 2529790..2530227(-) (comGD) [Bacillus licheniformis strain H2]
ATGAATCAAAAAGGATTTACGCTTTTGGAAAGTTTAACTGTATTGATGATCGGTTCTATTATGTTCTCTCTTCTCTTTGC
TCTACTGCCTCCCATTTATGAAAAAAGAATCGTTCAGCACTTTGTCTCACAGCTTGAAGAGGATTTGCTTTACGCTCAGC
AGACGGCTCTCGTCCGCCATACGACGGTTAAGGTGCAGTTTGACTTTGCCGGCTGCCGCTATATCATGAAGCATTCGGAC
GAAGGCTCATCGCCTGAACTGGTCAGGACATACAGCTGCAATATCGCAATCAAAAAGTCGACGCTCAAACCAATTCTTAC
TTTTAATCCAAGCGGTGTTCCGAATCAAGGGGGAAAGATCGTGATCGATACACAGCATGCCTCTTTTATACTGACGATCT
ATTTAGGAAGCGGAAAGATTAATGTTCAAAAAAAATAA

Domains

Predicted by InterProScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (2-25)

3D structure

• AlphaFold DB: Q8VQ70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Bacillus subtilis subsp. subtilis str. 168	39.86	98.621	0.393