Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   JAV55_RS09055 Genome accession   NZ_CP065943
Coordinates   1783849..1784211 (+) Length   120 a.a.
NCBI ID   WP_003181796.1    Uniprot ID   A0A6I1MJA4
Organism   Bacillus licheniformis strain H2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1778849..1789211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS09025 (JAV55_09025) flgD 1779693..1780160 (+) 468 WP_003181782.1 flagellar hook assembly protein FlgD -
  JAV55_RS09030 (JAV55_09030) flgG 1780188..1780979 (+) 792 WP_003181784.1 flagellar basal body rod protein FlgG -
  JAV55_RS09035 (JAV55_09035) - 1781022..1781237 (+) 216 WP_003181786.1 flagellar FlbD family protein -
  JAV55_RS09040 (JAV55_09040) fliL 1781234..1781665 (+) 432 WP_003181788.1 flagellar basal body-associated protein FliL -
  JAV55_RS09045 (JAV55_09045) fliM 1781701..1782699 (+) 999 WP_003181789.1 flagellar motor switch protein FliM -
  JAV55_RS09050 (JAV55_09050) fliY 1782689..1783822 (+) 1134 WP_003181794.1 flagellar motor switch phosphatase FliY -
  JAV55_RS09055 (JAV55_09055) pilH 1783849..1784211 (+) 363 WP_003181796.1 response regulator Machinery gene
  JAV55_RS09060 (JAV55_09060) fliZ 1784224..1784898 (+) 675 WP_003181797.1 flagella biosynthesis regulatory protein FliZ -
  JAV55_RS09065 (JAV55_09065) fliP 1784891..1785556 (+) 666 WP_009328512.1 flagellar type III secretion system pore protein FliP -
  JAV55_RS09070 (JAV55_09070) fliQ 1785572..1785841 (+) 270 WP_003181801.1 flagellar biosynthesis protein FliQ -
  JAV55_RS09075 (JAV55_09075) fliR 1785849..1786625 (+) 777 WP_003181804.1 flagellar biosynthetic protein FliR -
  JAV55_RS09080 (JAV55_09080) flhB 1786625..1787704 (+) 1080 WP_003181806.1 flagellar biosynthesis protein FlhB -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13280.60 Da        Isoelectric Point: 4.5762

>NTDB_id=452134 JAV55_RS09055 WP_003181796.1 1783849..1784211(+) (pilH) [Bacillus licheniformis strain H2]
MAYKILVVDDAAFMRMMIKDILVKNGFEVVAEAQDGAQAVEKYKEHSPDLVTMDITMPEKDGITALKEIKEIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVMEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=452134 JAV55_RS09055 WP_003181796.1 1783849..1784211(+) (pilH) [Bacillus licheniformis strain H2]
ATGGCTTACAAGATTTTAGTAGTTGATGATGCAGCATTTATGAGAATGATGATTAAAGATATTTTGGTGAAAAACGGCTT
TGAAGTCGTCGCAGAAGCGCAAGACGGGGCACAGGCTGTTGAAAAGTATAAAGAGCATTCACCTGATCTTGTCACAATGG
ATATCACGATGCCGGAAAAAGACGGAATCACGGCTCTTAAAGAAATCAAGGAAATCGATCCGCAGGCAAAAATCATCATG
TGTTCGGCAATGGGCCAGCAATCGATGGTTATCGACGCCATCCAGGCGGGAGCGAAAGACTTTATCGTCAAACCGTTCCA
GGCTGACCGCGTCATGGAAGCCATCAATAAAACGCTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MJA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.136

98.333

0.375