Detailed information NTG0452098

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: JAV55_RS05285
• Genome accession: NZ_CP065943
• Coordinates: 1061396..1062514 (+)
• Length: 372 a.a.
• NCBI ID: WP_009328956.1
• Uniprot ID: -
• Organism: Bacillus licheniformis strain H2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1056396..1067514

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JAV55_RS05260 (JAV55_05260)	-	1056596..1058101 (+)	1506	WP_025808244.1	coproporphyrinogen III oxidase	-
JAV55_RS05265 (JAV55_05265)	-	1058183..1059394 (-)	1212	WP_003180218.1	cation:proton antiporter	-
JAV55_RS05270 (JAV55_05270)	-	1059401..1059898 (-)	498	WP_003180220.1	cation:proton antiporter regulatory subunit	-
JAV55_RS05275 (JAV55_05275)	-	1059963..1060292 (-)	330	WP_016886161.1	hypothetical protein	-
JAV55_RS05280 (JAV55_05280)	-	1060493..1061269 (+)	777	WP_011197707.1	enoyl-CoA hydratase	-
JAV55_RS05285 (JAV55_05285)	rapC	1061396..1062514 (+)	1119	WP_009328956.1	Rap family tetratricopeptide repeat protein	Regulator
JAV55_RS05290 (JAV55_05290)	-	1062504..1062641 (+)	138	WP_016886158.1	hypothetical protein	-
JAV55_RS05295 (JAV55_05295)	-	1062646..1062924 (+)	279	WP_003180226.1	hypothetical protein	-
JAV55_RS05300 (JAV55_05300)	-	1062999..1063184 (-)	186	WP_003180228.1	YhzD family protein	-
JAV55_RS05305 (JAV55_05305)	-	1063302..1064198 (+)	897	WP_003180230.1	ABC transporter ATP-binding protein	-
JAV55_RS05310 (JAV55_05310)	-	1064191..1065459 (+)	1269	WP_003180232.1	ABC transporter permease	-
JAV55_RS05315 (JAV55_05315)	-	1065579..1066805 (+)	1227	WP_009328954.1	DNA repair exonuclease	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 43356.03 Da
• Isoelectric Point: 5.5287

>NTDB_id=452098 JAV55_RS05285 WP_009328956.1 1061396..1062514(+) (rapC) [Bacillus licheniformis strain H2]
MKQKIPSEYVARKLNDWYNAIRKNQIAASESLKAEILNDFQDMEENQDVLLYYSLLEFRHKLMLSYLKPKETENIEKNLR
DLEEKEDQMTGLLNYYYWFFKGMYEFKQKRFVKAIGCYKTAEQKVSALEDEVEKAEFYYKLAEIYYYINQRYLSINYATL
ASDIFNRYETLKEKKIFCDFIIAGNWVESMTYGPALKSLANALEDARKIKNSHLTAAAHFNLGNCYFHQESYREASDHME
SALSIFEQESSSYIPKVLYNLMYVRLKQGNHAGAAACYEKGIRSAASLGDEEHAAKLNILCGLYLDGGDQKAVENGFDYL
ESNHLYAAVEELALDAAQYYNQIERLKDSIFYYEKCAQASRKIKRGDALYES

Nucleotide

• Length: 1119 bp

>NTDB_id=452098 JAV55_RS05285 WP_009328956.1 1061396..1062514(+) (rapC) [Bacillus licheniformis strain H2]
TTGAAACAGAAGATTCCATCTGAATACGTTGCTAGAAAGCTGAATGATTGGTACAACGCCATTCGGAAAAATCAGATCGC
CGCCAGTGAATCATTGAAAGCGGAAATTTTAAATGATTTTCAAGACATGGAAGAAAATCAGGACGTCCTGCTCTACTATT
CGCTGCTTGAATTCAGGCATAAACTGATGCTCAGCTATTTGAAACCGAAAGAGACTGAAAATATTGAAAAAAACCTCCGC
GACTTAGAAGAAAAAGAAGACCAAATGACGGGTTTATTAAACTATTATTACTGGTTTTTTAAAGGGATGTATGAGTTCAA
ACAAAAGCGGTTCGTCAAAGCAATCGGCTGCTATAAAACGGCTGAACAAAAAGTCAGCGCACTGGAAGACGAGGTTGAAA
AAGCGGAATTTTATTATAAGCTTGCGGAAATCTACTATTATATCAACCAGAGATACCTGTCGATCAACTATGCGACGCTA
GCTTCCGACATTTTTAACCGGTATGAAACGCTAAAAGAAAAAAAGATTTTCTGCGATTTTATCATTGCCGGTAATTGGGT
TGAATCGATGACATACGGACCCGCGCTGAAAAGCCTGGCCAATGCGCTTGAAGACGCCAGGAAAATCAAAAACAGCCATT
TGACGGCAGCCGCTCATTTTAATTTGGGAAATTGCTATTTCCACCAAGAATCGTACCGGGAAGCCTCAGATCATATGGAG
AGCGCCCTTTCCATTTTTGAACAGGAAAGTTCATCATATATTCCCAAAGTGCTGTACAACTTGATGTACGTCCGTCTCAA
GCAGGGGAACCATGCCGGAGCTGCCGCCTGTTATGAAAAAGGCATCCGAAGCGCGGCATCGCTCGGGGATGAAGAACACG
CGGCAAAGCTTAACATTCTGTGCGGGCTGTATTTAGACGGAGGGGATCAGAAAGCCGTGGAAAACGGATTTGATTATTTG
GAGTCAAATCATTTATATGCTGCTGTTGAAGAGCTGGCTTTAGATGCAGCCCAGTATTATAATCAAATTGAGCGGCTGAA
AGATTCCATTTTTTACTATGAAAAGTGCGCTCAGGCAAGTCGAAAAATCAAAAGGGGAGATGCGTTGTATGAAAGCTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-248)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-64)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.166	100	0.374