Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   JAV55_RS04635 Genome accession   NZ_CP065943
Coordinates   930559..931677 (+) Length   372 a.a.
NCBI ID   WP_003179978.1    Uniprot ID   Q65M68
Organism   Bacillus licheniformis strain H2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 925559..936677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS04615 (JAV55_04615) - 927527..927742 (+) 216 WP_003179974.1 hypothetical protein -
  JAV55_RS21585 - 927919..928056 (+) 138 Protein_856 N-acetylmuramoyl-L-alanine amidase -
  JAV55_RS04625 (JAV55_04625) - 928145..928483 (-) 339 WP_009329009.1 hypothetical protein -
  JAV55_RS04630 (JAV55_04630) - 928509..930233 (-) 1725 WP_003179977.1 T7SS effector LXG polymorphic toxin -
  JAV55_RS04635 (JAV55_04635) rapC 930559..931677 (+) 1119 WP_003179978.1 Rap family tetratricopeptide repeat protein Regulator
  JAV55_RS04640 (JAV55_04640) - 932470..933795 (+) 1326 WP_198479884.1 TGS domain-containing protein -
  JAV55_RS04645 (JAV55_04645) - 934042..934260 (+) 219 WP_003179982.1 hypothetical protein -
  JAV55_RS04650 (JAV55_04650) aroD 934648..935412 (+) 765 WP_003179983.1 type I 3-dehydroquinate dehydratase -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 43946.57 Da        Isoelectric Point: 6.5966

>NTDB_id=452095 JAV55_RS04635 WP_003179978.1 930559..931677(+) (rapC) [Bacillus licheniformis strain H2]
METIPSSEVGIKINRWYNEIQKLNVIEAERLKAEVHLAIERMEEDQDLLSYYQLMNFRHELMLEYLFPAEKKLSKSDYLR
EIEGQGRKLSGLLEYYFSFFTGMYHFSRGKYIKAIKAYRAAEKKLTKVSDKIEKAEFYYKMAEVFYHMKQTHMSMYYVSL
AYDIYKSYDAYVIRRINCLFVVAGNYIDLSTHDQALPHLLSAKESAEDIQNKAIVAKALLNVAYCYNAMERPTKAIEYFH
KAIDVAKEIKAKELTQAYYDLALIHFRNNENIEGRKFYEKALESARVFEDELFLCLLDVLEALFIKSANKSEVLETMKPL
RDSRGYPYLEELALEAALFYTRNERPNDSIFFYDQMVQAQKQIKRGDFLYEI

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=452095 JAV55_RS04635 WP_003179978.1 930559..931677(+) (rapC) [Bacillus licheniformis strain H2]
TTGGAGACTATCCCGTCTTCAGAAGTTGGAATCAAAATAAACCGCTGGTACAACGAAATTCAAAAATTAAACGTAATAGA
AGCAGAACGATTAAAGGCGGAAGTTCACTTAGCTATAGAAAGAATGGAAGAAGATCAGGACTTGCTTTCCTATTATCAGC
TTATGAATTTTAGACATGAGTTAATGTTGGAATATCTTTTCCCGGCAGAAAAAAAGCTGAGCAAATCTGATTATCTTAGG
GAAATTGAGGGACAGGGAAGAAAATTGTCAGGCTTGCTCGAATACTATTTTTCCTTTTTCACCGGAATGTATCATTTTTC
TCGCGGAAAATACATAAAGGCAATCAAGGCATATAGAGCAGCAGAAAAAAAGTTGACGAAAGTTTCAGATAAAATAGAAA
AGGCTGAATTCTATTATAAGATGGCGGAAGTGTTTTATCATATGAAACAGACTCATATGTCAATGTATTATGTGTCTCTC
GCTTATGATATTTATAAATCCTATGATGCATATGTGATTCGAAGAATTAATTGTCTATTCGTTGTTGCTGGGAATTACAT
TGATTTATCAACCCATGATCAAGCTTTACCGCATCTTTTAAGCGCTAAGGAATCCGCGGAAGACATTCAAAACAAGGCGA
TCGTTGCAAAGGCTCTTTTAAATGTAGCATATTGTTATAATGCAATGGAGAGACCAACAAAAGCTATTGAATACTTTCAT
AAGGCGATTGATGTAGCAAAGGAAATAAAGGCAAAAGAACTGACTCAGGCTTATTATGATTTGGCATTAATTCACTTTCG
AAATAACGAAAATATTGAAGGACGAAAATTTTATGAAAAGGCGCTTGAAAGTGCGCGGGTATTTGAAGATGAATTATTCC
TGTGTCTGTTGGATGTTTTAGAGGCACTGTTTATAAAATCAGCTAATAAGTCAGAGGTACTAGAAACAATGAAACCATTA
CGGGATAGTCGTGGTTACCCCTATCTTGAGGAACTGGCATTAGAAGCAGCTCTATTCTATACTAGGAATGAGCGGCCAAA
TGATTCCATATTTTTTTATGATCAGATGGTGCAGGCTCAGAAACAAATCAAAAGGGGCGACTTTCTGTATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(3-64)

Tetratricopeptide repeat (TPR_12)

(215-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65M68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.379
  rapF Bacillus subtilis subsp. subtilis str. 168

36.702

100

0.371