Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   JAV55_RS03980 Genome accession   NZ_CP065943
Coordinates   805652..806368 (+) Length   238 a.a.
NCBI ID   WP_003179748.1    Uniprot ID   -
Organism   Bacillus licheniformis strain H2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 800652..811368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS03965 (JAV55_03965) - 800854..802266 (+) 1413 WP_003179741.1 sodium:alanine symporter family protein -
  JAV55_RS03970 (JAV55_03970) treP 802456..803868 (+) 1413 WP_003179744.1 PTS system trehalose-specific EIIBC component -
  JAV55_RS03975 (JAV55_03975) treC 803942..805630 (+) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  JAV55_RS03980 (JAV55_03980) treR 805652..806368 (+) 717 WP_003179748.1 trehalose operon repressor Regulator
  JAV55_RS03985 (JAV55_03985) - 806475..807167 (+) 693 WP_003179750.1 N-acetyltransferase -
  JAV55_RS03990 (JAV55_03990) - 807294..808628 (+) 1335 WP_003179752.1 NTTRR-F1 domain -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27733.55 Da        Isoelectric Point: 5.8721

>NTDB_id=452091 JAV55_RS03980 WP_003179748.1 805652..806368(+) (treR) [Bacillus licheniformis strain H2]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYLIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=452091 JAV55_RS03980 WP_003179748.1 805652..806368(+) (treR) [Bacillus licheniformis strain H2]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATCTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.949

99.16

0.416