Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HPE41_RS07725 Genome accession   NZ_CP054371
Coordinates   1690434..1691063 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SCU-316     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1685434..1696063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE41_RS07705 (HPE41_07705) ycbZ 1685820..1687580 (-) 1761 WP_000156510.1 Lon protease family protein -
  HPE41_RS07710 (HPE41_07710) matP 1687766..1688218 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HPE41_RS07715 (HPE41_07715) ompA 1688294..1689349 (-) 1056 WP_000750414.1 porin OmpA -
  HPE41_RS07720 (HPE41_07720) sulA 1689706..1690215 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  HPE41_RS07725 (HPE41_07725) sxy/tfoX 1690434..1691063 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HPE41_RS07730 (HPE41_07730) yccS 1691026..1693188 (-) 2163 WP_000323868.1 YccS family putative transporter -
  HPE41_RS07735 (HPE41_07735) yccF 1693198..1693644 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HPE41_RS07740 (HPE41_07740) helD 1693767..1695821 (+) 2055 WP_021577221.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=452080 HPE41_RS07725 WP_000839153.1 1690434..1691063(+) (sxy/tfoX) [Escherichia coli strain SCU-316]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=452080 HPE41_RS07725 WP_000839153.1 1690434..1691063(+) (sxy/tfoX) [Escherichia coli strain SCU-316]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1